Mlit018202.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- CG12744_1
- Assembly
- GCA_964023185.1
- Location
- OZ026823.1:1350817-1352996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.5e-05 0.0019 19.1 1.2 1 23 22 44 22 44 0.97 2 19 0.21 16 6.7 0.2 5 21 52 68 49 72 0.89 3 19 0.0076 0.59 11.3 2.7 1 23 149 172 149 172 0.96 4 19 2e-05 0.0016 19.4 0.3 2 23 181 202 181 202 0.96 5 19 1.8e-05 0.0014 19.5 0.4 1 23 208 231 208 231 0.97 6 19 0.00021 0.016 16.2 1.2 1 23 237 259 237 259 0.97 7 19 0.0002 0.015 16.3 1.0 1 23 265 287 265 287 0.95 8 19 5.6e-06 0.00043 21.1 2.3 1 23 293 315 293 315 0.97 9 19 0.00089 0.069 14.2 6.7 2 23 321 342 321 343 0.95 10 19 1.3e-06 0.0001 23.1 2.0 1 23 352 375 352 375 0.97 11 19 3 2.3e+02 3.1 0.0 3 23 390 410 389 410 0.92 12 19 9.7e-05 0.0075 17.2 3.6 1 23 416 439 416 439 0.97 13 19 0.19 14 6.9 1.6 2 23 448 469 447 470 0.94 14 19 0.00056 0.043 14.8 6.5 1 22 473 494 473 494 0.95 15 19 1.3 97 4.3 0.3 2 23 498 519 497 520 0.90 16 19 0.04 3.1 9.0 3.2 1 23 528 550 528 550 0.94 17 19 0.0023 0.18 12.9 0.3 1 20 557 576 557 576 0.95 18 19 0.025 1.9 9.7 3.3 1 20 584 603 584 605 0.93 19 19 0.002 0.16 13.1 1.9 2 23 610 631 610 631 0.97
Sequence Information
- Coding Sequence
- ATGATGTTGTCTACTTGGGGAAGCTTATCTATTAATAGACCCGAGCACGACCCGAGCAAGCCATATCACTGTAAAGTGTGTTATTGGAGCTTCAACCAGAAGAGCACCCTGGAAGCTCATCTAGTCGTGCACAAGCCAGCGCCGCATGCGTGTGACTGTGGTGTTGCTTTCTACCAAGCACAGGACCTGGAGTCGCACAGGATATTACTATCGCACCCCAAGATAGGAAGAAGGACCGGACCTAGAGACAatgaaaagaataaaaataagtcCAAAAAGACTGGACCTAGTgacaaaaaaattatcaaaaaaaagaCTAAAAATACTAGTACCAATACGACAAAAAGCGGTGATGCCACCAAAATAACGCCCGTTCTCATTAAGCCTATTGAATGTAGAGTGGGTGGCAACACTATATTCGTAGAGCGCGATGAGAAGGGCCTATTTCATTGCACGCTCTGTGACAACGCCTTCAAAGTGGCCAAATATTTTAGAGATCACATGCAACTCAAACACGGCTGGAACTTCGACTTCATGCGCACGTGCGACATCTGCGGGAAAACCCTCAAAAGTAGCAGTAATATGGAACTACACATGATACTACACACAGGCGAGAGACGGTATCCCTGTCCCATTTGCAACAAGCGGTTCACGCAAAGCGTCGTGGTCAAAAGTCACATAAAACGTATGCACACCAAAGAGCGAGATTTCGCCTGCAGTATGTGTCCTAAAAAGTTTAGTGAAAAGGCCAAAATGCAGTATCACGAAAGAACGCACACCGGGGTGAAGCCTCATGCTTGCCGGACGTGTTCTAAGCGCTTCTCGGACCCGTCCGCGTGGAGGCGGCATGAGCTCATTCACACGGGGTTGAAGCCACATCGCTGCAAGATCTGCCCCAAGGCTTTCTGCGACCCAGCAGCCCTGTTCCGTCACAAGCGCGGGCATGCTGGCTATAAGGAGCAGTGCAAGTTCTGCTCGCGCTCCTTCGCCTCCCGCAGCTGTCTCATTACACACACGCGCATGCATCACTCCACTCTCCGCGACGAAGACATGTTCGAGTGCGACCACTGCGGGAAACGCTTTGTAACCAAAAACTATTTGGCCAACCACATCAAGAACATGCACGTGGTCACGCCTAACAATAAGGTGATAAAGTTGAGAGTCGCCTGCAATATCTGCGACGTGCTGCTAAACCCCAGTAACATGAGTGTGCACTTGGAGAAGGTACATCTCAAGCGGTATCCGCACAAGTGCGAAGACTGCGACAAGCGCTACTTCTATAAGAACGAGTTGAAGAAGCACTGGCAGCGCGCGCACGGGCCGGAGCCGCCACCGCGCGTGCAGTGCGACATCTGCCGTGCCACCTACACACATAAACTGACCCTGCTCCCACACATGATCTACCACCACCTCGGCCACAAGTGCACTACTTGCAACAAATGTTTCCAAACATCCCGGGACTTGGAGAGGCACAAGAGGAAAGGTTGCCTGCGTTGTGACGTGTGTAATGCGCCGTTCGCTTTTCTCTTCAAAAAGGTGGAGCATATGGCCGGCCACCATCCTAAGCAAGGACAGCCAGTGTTCGAGTGCGGTCAATGCGGTAAGACATATCTGACCAAGAGTCGTTTGCAGTCGCATTGCAAAGTGCACAAGACAGCTGCGGCCTCGTACCAGTGCCACGAATGCGACGCGAAATTCCCTCGGAAGAAAGACATTGTGGACCACATCTGGGGCGAGCACATGTTGTGGCATCACTGCGACCGCTGCCAGAAGCGTTTCTTCTCCATATATGACTTACGAAGGCACAAAGCAAGCTGCGAGTCTGAAAAATGCGACATCTGCAACAAGACAGTTACCAGGTTGTGTGGACTGAGAGACCACAGAGCCATGCACGAGCCATCCAAGTACCAGTGGCGACAAAAAATATAG
- Protein Sequence
- MMLSTWGSLSINRPEHDPSKPYHCKVCYWSFNQKSTLEAHLVVHKPAPHACDCGVAFYQAQDLESHRILLSHPKIGRRTGPRDNEKNKNKSKKTGPSDKKIIKKKTKNTSTNTTKSGDATKITPVLIKPIECRVGGNTIFVERDEKGLFHCTLCDNAFKVAKYFRDHMQLKHGWNFDFMRTCDICGKTLKSSSNMELHMILHTGERRYPCPICNKRFTQSVVVKSHIKRMHTKERDFACSMCPKKFSEKAKMQYHERTHTGVKPHACRTCSKRFSDPSAWRRHELIHTGLKPHRCKICPKAFCDPAALFRHKRGHAGYKEQCKFCSRSFASRSCLITHTRMHHSTLRDEDMFECDHCGKRFVTKNYLANHIKNMHVVTPNNKVIKLRVACNICDVLLNPSNMSVHLEKVHLKRYPHKCEDCDKRYFYKNELKKHWQRAHGPEPPPRVQCDICRATYTHKLTLLPHMIYHHLGHKCTTCNKCFQTSRDLERHKRKGCLRCDVCNAPFAFLFKKVEHMAGHHPKQGQPVFECGQCGKTYLTKSRLQSHCKVHKTAAASYQCHECDAKFPRKKDIVDHIWGEHMLWHHCDRCQKRFFSIYDLRRHKASCESEKCDICNKTVTRLCGLRDHRAMHEPSKYQWRQKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -