Basic Information

Insect: Macaria liturata
Gene Symbol: -
Assembly: GCA_964023185.1
Location: OZ026810.1:7795378-7799834[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0023 0.17 12.9 3.1 1 23 137 159 137 159 0.97

2 12 0.00023 0.017 16.1 2.3 1 23 163 185 163 185 0.95

3 12 2.4e-06 0.00018 22.3 2.5 1 23 215 237 215 237 0.99

4 12 1.4e-05 0.001 19.9 1.2 1 23 246 268 246 268 0.95

5 12 5.3e-08 4.1e-06 27.5 1.5 2 23 274 295 273 295 0.97

6 12 1.1e-05 0.00086 20.2 2.5 2 23 302 323 302 323 0.98

7 12 6.7e-08 5.2e-06 27.2 0.5 1 23 329 351 329 351 0.96

8 12 3.9e-06 0.0003 21.6 2.9 1 23 357 379 357 379 0.98

9 12 4e-05 0.0031 18.5 3.3 1 23 385 407 385 407 0.98

10 12 0.18 14 7.0 5.1 3 23 415 435 413 435 0.97

11 12 1.5e-07 1.2e-05 26.1 1.3 1 23 441 463 441 463 0.98

12 12 0.00049 0.038 15.0 0.6 1 20 469 488 469 491 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0023	0.17	12.9	3.1	1	23	137	159	137	159	0.97
2	12	0.00023	0.017	16.1	2.3	1	23	163	185	163	185	0.95
3	12	2.4e-06	0.00018	22.3	2.5	1	23	215	237	215	237	0.99
4	12	1.4e-05	0.001	19.9	1.2	1	23	246	268	246	268	0.95
5	12	5.3e-08	4.1e-06	27.5	1.5	2	23	274	295	273	295	0.97
6	12	1.1e-05	0.00086	20.2	2.5	2	23	302	323	302	323	0.98
7	12	6.7e-08	5.2e-06	27.2	0.5	1	23	329	351	329	351	0.96
8	12	3.9e-06	0.0003	21.6	2.9	1	23	357	379	357	379	0.98
9	12	4e-05	0.0031	18.5	3.3	1	23	385	407	385	407	0.98
10	12	0.18	14	7.0	5.1	3	23	415	435	413	435	0.97
11	12	1.5e-07	1.2e-05	26.1	1.3	1	23	441	463	441	463	0.98
12	12	0.00049	0.038	15.0	0.6	1	20	469	488	469	491	0.95

Sequence Information

Coding Sequence: ATGGACACAGAAATGTTCTCATCATGTAGAACTTGTACTAGAAATGATGtcaatttagttaatttgtacGAACCAGCGATGCGAACTGATGAGAGCAACAACCTTCAATTGGTCGAGTTATTGATGGAATGCACTGCGATACAGGCGAAGCAAGATGATGGTTTGCCACAGAACATTTGTGAACAGTGCTTCAACTTTCTTCAAAACTTCTCCACATTCCGACTTCAAGCATATAATTCAGATAAACACTTCAAAAAACTACTTCAAGATGTGAAATCTGAAGTAAAACATGAGATAGAAATAAGTTTAGACCTGTACAAGGAAgaaaatgatgattattttgaTACATTCAGTGATTCCCAAGACACTACTGATTCAGCCAATATTGTTAAAGTAGAAAACAACATATTTAATTGCTCACAGTGCAGCAAAACATTTTCAAAAGAAAAGAAGTACCTCAAACATGTAGAATCTCACTCACAATCATTCCTATGCCATTACTGTGACAAACAATTTAGCAAAGAGATCTCATGGCAGAAACATATAGCCAAACACAATACTGATACTGAAGAAGGCTCCGAGAAACCAAATTGGGTCCAGGACTTAGTTATAAAGAGAGAAAGCATCAGCGAAGAGCAAAGATATCAATGTCCACACTGTGACAAGTCATATACAAAGATAAAAGCTTTAACAACCCATATTAATAAACATGTGCAGAACAAAATTGAGGCTGAGTTCTTGTGTGATATTTGcagtaaaagttttatttctaaacCTCGTTTAAGAAGGCATATGAAACTTCATCTAAATTTCAAGCTGAAATGTACCAAGTGTGATAAGAGCTACTCTCGGAGTGACCAGTTGAAGGCACATATGTTGACTCACAAGGAGAACAAGCCTAATGTGTGCCCACATTGTAATAAAGCATTTGCCCAAGTATGCAGTCTCAAAGACCACATCCGCACGCACACAAAGGAGACCCCCTACCTGTGCTCGGAGTGTGGCAAGGGGTTTGCAAACAGCTCCAACCTGCGCCAGCACATGCTGCGACACACCGGGCTCAAGCCTTATGAGTGCAAACTATGTCCAAAGACATTCTGTACTAAAGGTCAAATGACGTCCCACATGGTGACGCACACAGGCGCGCACCCCTACAAGTGTGACAAGTGCGGCGCGTCTTTCACGAAGCACAACTCTCTGAAGAAACACTCCATGATCCACTCCGGGCTGCGGCCGTTTGGCTGCGACTCCTGCGCCATGCGGTTCACATGCAAAGACCACCTGAAGCGTCACTACCGTATCCACACGGGTGAGAAGCCGTACGCGTGCAAGTACTGCTCGCGCGCCTTCACGCAGAGCAACGACCTCGTCAAGCACATGCGGACGCACCTCGGACAGAACATATACAGTTGCTCAGTTTGTGGCCTGGGTTTCCGCCTCCAAAGTGAGCTTAAGCAGCACTATCCTTTCCACTTCTCCGACGAAGCCAACGTCCGGAACCTTCTAGCAGAGAAGAACATTCCAGATCTAACGCAGAAGAACATTCTCGAACAAGCGAGAAAGAACATACTCGATCAAACTGGAAAAATATACTTCGAGCAAACCGACAAGAATATACTGGAATCTGAGGCGAGTTTCCTCGAAGCCGGGAAGAGTTTTCTAGAAACGCAAAAGAAATTTCCAGATCTTTTGCCTCCGCCTGTTGAGAACAAGATGGCGAATGTTCACGAAAAGTTTATGATTACAATAAATAGTGTGGACGGAAGTAATATGGTGGCTATTAATATTGAGCCTGAATCTAGCATGCTCAAAGTGTAA
Protein Sequence: MDTEMFSSCRTCTRNDVNLVNLYEPAMRTDESNNLQLVELLMECTAIQAKQDDGLPQNICEQCFNFLQNFSTFRLQAYNSDKHFKKLLQDVKSEVKHEIEISLDLYKEENDDYFDTFSDSQDTTDSANIVKVENNIFNCSQCSKTFSKEKKYLKHVESHSQSFLCHYCDKQFSKEISWQKHIAKHNTDTEEGSEKPNWVQDLVIKRESISEEQRYQCPHCDKSYTKIKALTTHINKHVQNKIEAEFLCDICSKSFISKPRLRRHMKLHLNFKLKCTKCDKSYSRSDQLKAHMLTHKENKPNVCPHCNKAFAQVCSLKDHIRTHTKETPYLCSECGKGFANSSNLRQHMLRHTGLKPYECKLCPKTFCTKGQMTSHMVTHTGAHPYKCDKCGASFTKHNSLKKHSMIHSGLRPFGCDSCAMRFTCKDHLKRHYRIHTGEKPYACKYCSRAFTQSNDLVKHMRTHLGQNIYSCSVCGLGFRLQSELKQHYPFHFSDEANVRNLLAEKNIPDLTQKNILEQARKNILDQTGKIYFEQTDKNILESEASFLEAGKSFLETQKKFPDLLPPPVENKMANVHEKFMITINSVDGSNMVAINIEPESSMLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -