Basic Information

Insect: Macaria liturata
Gene Symbol: -
Assembly: GCA_964023185.1
Location: OZ026809.1:11563468-11567181[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0003 0.023 15.7 0.6 3 23 33 53 31 53 0.96

2 17 3.2e-05 0.0025 18.8 0.2 1 22 58 79 58 79 0.95

3 17 0.0025 0.19 12.8 0.6 1 23 86 109 86 109 0.97

4 17 0.017 1.3 10.2 2.1 2 23 117 139 116 139 0.96

5 17 0.0052 0.4 11.8 0.6 1 23 145 168 145 168 0.96

6 17 4.6e-06 0.00035 21.4 0.2 2 23 174 195 173 195 0.97

7 17 2.7e-06 0.00021 22.1 2.9 1 23 201 223 201 223 0.98

8 17 1.2e-06 9.1e-05 23.3 1.1 3 23 231 251 230 252 0.96

9 17 0.37 28 6.0 0.0 2 23 349 371 348 371 0.91

10 17 0.00072 0.056 14.5 1.2 1 23 392 414 392 414 0.97

11 17 0.00065 0.05 14.6 0.8 1 23 418 441 418 441 0.95

12 17 0.83 64 4.9 5.0 2 23 449 471 448 471 0.86

13 17 0.047 3.7 8.8 0.8 1 23 476 499 476 499 0.78

14 17 0.00031 0.024 15.7 1.4 1 23 505 528 505 528 0.98

15 17 1.4e-05 0.0011 19.9 1.2 2 23 535 556 534 556 0.96

16 17 0.00026 0.02 15.9 1.1 1 23 562 584 562 584 0.98

17 17 1.3e-05 0.00099 20.0 5.8 1 23 590 612 590 613 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0003	0.023	15.7	0.6	3	23	33	53	31	53	0.96
2	17	3.2e-05	0.0025	18.8	0.2	1	22	58	79	58	79	0.95
3	17	0.0025	0.19	12.8	0.6	1	23	86	109	86	109	0.97
4	17	0.017	1.3	10.2	2.1	2	23	117	139	116	139	0.96
5	17	0.0052	0.4	11.8	0.6	1	23	145	168	145	168	0.96
6	17	4.6e-06	0.00035	21.4	0.2	2	23	174	195	173	195	0.97
7	17	2.7e-06	0.00021	22.1	2.9	1	23	201	223	201	223	0.98
8	17	1.2e-06	9.1e-05	23.3	1.1	3	23	231	251	230	252	0.96
9	17	0.37	28	6.0	0.0	2	23	349	371	348	371	0.91
10	17	0.00072	0.056	14.5	1.2	1	23	392	414	392	414	0.97
11	17	0.00065	0.05	14.6	0.8	1	23	418	441	418	441	0.95
12	17	0.83	64	4.9	5.0	2	23	449	471	448	471	0.86
13	17	0.047	3.7	8.8	0.8	1	23	476	499	476	499	0.78
14	17	0.00031	0.024	15.7	1.4	1	23	505	528	505	528	0.98
15	17	1.4e-05	0.0011	19.9	1.2	2	23	535	556	534	556	0.96
16	17	0.00026	0.02	15.9	1.1	1	23	562	584	562	584	0.98
17	17	1.3e-05	0.00099	20.0	5.8	1	23	590	612	590	613	0.96

Sequence Information

Coding Sequence: ATGCTTTTTGACCACCTTATTGAAGCTCATGACAAGCCACTCGACAGAAAGAGTAAGGCCGGTTTAGTTCCTTTCTTGCTAGACGACGGCTTAGCGTGCGGCGAGTGTGGCTTGAAGTTCGACTTCTTCCACAACTTGACTGTCCATATGAACGAACACAGTAAAATGAATTTCATATGTTCCGAATGTGGCCGGGCTTTTAACACCGAACAAAAGTTGAAAGTACATTTGAGGCGTAAATTAAACCCGAAAAAGTTCAAATGCTCTATATGCGGCGATAGTTTCTCTGCGTTATCTAAAAGGCAAACTCACATGAAGTTGGCACATGATATTGTGGACTATAGAATCAAATGCCTTTATTGCACGGAAGTGTTCAAGAAATACGATCACAGAGTGACGCATCTGCAGAGGGTGCATGGCAAGGTTATTAACTATCCTTGCAAAATGTGCTCGGAAATATTCGATACCAGTAATAAACGTTCCTCGCACATGCGAGACGTGCACAGAGGCAAGTCTGTGCGTTGTGAGGAATGCGGAATGACATTCCGAGCTCCTTCAGACTTGAAGATACACATGACTAAACATACGGGAGTCAAAGAATACAAGTGCAAAGAATGCGGGAAAGCGTTCGCAAGAAAAAACATGCTGTATCATCATTCACGTATACATTTTGCTGATGCGAGAGTTTTGTGCGCGTACTGTGGTAAGGCGTTTGCCCAGAAAGGCAATCTGAAGATACATTTGAAAAAGCATCACCCTGATGTAGTTTCTAGCGAGAATCAGGAGAGAGGCACCGTGGTGAGACGGACCGCGTCGACTCTCGATAGTTTCGGAGACGCGCGAGACAACGCGGCTCTTATTCTGGAATATTCTAACGCTTGTCCTTTCAGATATATCACGAGCTTGTTTGTTTGCGCGTTCTGTCAATTTAAATCACCAGACTTTGAACCTGTCAAAACTCACAGCAAAGAACATAAGATAAAAGCTTTGGCTCTCGCTAAAATGAGTCGTTCTTCGGTTTGCAAAGCAGAAGTTACAGACTTGAAATGTGAAATTTGTGATGCGAGCGCGGCGAACATAACTTGGCTCTTCGACCATCTGATAGAGACTCACAACAAGCCCTTAAATAGAAATCATAAGCCCGGTATCGTCCCCTACCTGTTGACTGGCGGGTTCACATGTGCCGACTGCAACTTGGCCTACGACCGATTCCACAATTTGAACACCCATGTGAACGAACATTATTCCAACTTCATTTGTTCGGAATGTGGCCGGAGCTGCGCTTCCGAACAGCGCTTGCGAGCTCACATTCTCTACACACACAACAAGAAGGCGAAAATGTTACATTGCTCCAAATGCGATGAGAAATTCACGACAGCACACCAGAAACGCTGCCACATGATAGCCGCTCATAAAATGATGCCCTACAAGTGTCAGCACTGCGATGAGTCCTTCGAGATATTCAGATTAAAAGTGGCACATTTGAATGAAGTCCACAATAAGAAAATAGAATATCCTTGCAGCATGTGCTCCAAGTCATTCATGAGCAGTACCTCGAGGTCTGTCCACATGCGCAGTACGCACATCAGAAGCGATGATATATCCTGCCACATTTGCGGCGTGTTGTTCAACAATAACTCGCAATTAAAGAATCACATGGTGAAACATAGCGGCGAGAAGAATTACCACTGTGAGGTGTGTAAGAAAGCATTCGCCTGGCAGAAGTCTTTGAGAGGTCACATGCGGATACATAATAATGATAGGCGGTTTGTCTGTGTGCATTGCGGCAAGGCTTTCGTACAGAAATGCAGTCTGAAGGGACATATGAAGACCCATCACCCAGACGCTGAATAA
Protein Sequence: MLFDHLIEAHDKPLDRKSKAGLVPFLLDDGLACGECGLKFDFFHNLTVHMNEHSKMNFICSECGRAFNTEQKLKVHLRRKLNPKKFKCSICGDSFSALSKRQTHMKLAHDIVDYRIKCLYCTEVFKKYDHRVTHLQRVHGKVINYPCKMCSEIFDTSNKRSSHMRDVHRGKSVRCEECGMTFRAPSDLKIHMTKHTGVKEYKCKECGKAFARKNMLYHHSRIHFADARVLCAYCGKAFAQKGNLKIHLKKHHPDVVSSENQERGTVVRRTASTLDSFGDARDNAALILEYSNACPFRYITSLFVCAFCQFKSPDFEPVKTHSKEHKIKALALAKMSRSSVCKAEVTDLKCEICDASAANITWLFDHLIETHNKPLNRNHKPGIVPYLLTGGFTCADCNLAYDRFHNLNTHVNEHYSNFICSECGRSCASEQRLRAHILYTHNKKAKMLHCSKCDEKFTTAHQKRCHMIAAHKMMPYKCQHCDESFEIFRLKVAHLNEVHNKKIEYPCSMCSKSFMSSTSRSVHMRSTHIRSDDISCHICGVLFNNNSQLKNHMVKHSGEKNYHCEVCKKAFAWQKSLRGHMRIHNNDRRFVCVHCGKAFVQKCSLKGHMKTHHPDAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -