Mlit006416.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026809.1:11548134-11554134[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 8.7e-05 0.0067 17.4 1.0 1 23 136 158 136 158 0.97 2 26 0.0001 0.0077 17.2 2.4 1 23 162 185 162 185 0.96 3 26 0.0043 0.33 12.0 1.4 2 23 193 215 192 215 0.95 4 26 0.6 46 5.3 4.3 1 23 220 243 220 243 0.94 5 26 0.0016 0.13 13.4 0.6 1 23 249 272 249 272 0.95 6 26 6.2e-05 0.0048 17.8 1.2 2 23 279 300 278 300 0.97 7 26 1.1e-06 8.6e-05 23.3 1.5 1 23 306 328 306 328 0.98 8 26 0.0034 0.26 12.4 1.4 1 17 334 350 334 351 0.94 9 26 7.1 5.5e+02 1.9 0.2 3 23 391 411 389 411 0.95 10 26 0.0039 0.3 12.2 0.3 1 23 478 500 478 500 0.95 11 26 3.2e-05 0.0024 18.8 1.9 1 23 504 526 504 526 0.98 12 26 0.0032 0.25 12.5 4.3 1 23 533 556 533 556 0.96 13 26 0.87 67 4.8 0.4 1 11 561 571 561 584 0.74 14 26 0.0011 0.085 13.9 1.1 1 23 590 613 590 613 0.96 15 26 0.00011 0.0087 17.0 1.0 2 23 620 641 619 641 0.97 16 26 1.1e-05 0.00087 20.2 1.5 3 23 649 669 647 669 0.95 17 26 0.035 2.7 9.2 0.8 1 17 675 691 675 692 0.93 18 26 0.19 15 6.9 0.8 1 23 720 742 720 742 0.97 19 26 0.0012 0.092 13.8 1.2 1 23 809 831 809 831 0.96 20 26 0.003 0.23 12.5 2.9 1 23 835 857 835 857 0.96 21 26 0.00031 0.024 15.6 1.7 1 23 865 888 865 888 0.96 22 26 0.017 1.3 10.2 1.6 1 23 893 915 893 916 0.95 23 26 0.0021 0.16 13.0 0.6 1 23 922 945 922 945 0.96 24 26 7.6e-06 0.00059 20.7 0.9 2 23 952 973 951 973 0.96 25 26 6.6e-06 0.00051 20.9 2.8 1 23 979 1001 979 1001 0.98 26 26 0.0021 0.16 13.0 2.7 1 23 1007 1030 1007 1030 0.96
Sequence Information
- Coding Sequence
- ATGATTTGGATTTTTCTTTTCGTTTTAGGACCGATCAGCAAGAAGTGTACCACGCCGAGCGCACAAGCCAGAGATGAGCGAGACAACGCTATTAACATATTCAAATATTCTAACGCGTCTCCGttcaaatattacaaaaatactttcGGCTGTGCTCATTGTCCTTTCAAATCGGCAGACTTTGGTCCTATCAAATTACATACAAGGGAACATAGAGATACACTCGTTTACAAAAAGAAGAATCTTTTAACGTGGAAGGCAGATGTATCTGGCCTGTGTTGTGAGCTCTGTAAGGCACATATGGCCGACGTGCCCACGTTGTTCGACCACCTCATTGAAGCCCACAACAAACCACTGAACAGAAACTTCAAGCCTGGCATAGTACCATATTTGCTAGACAAAGGGTTCGCCTGCGCAGACTGCGGACAGTCGTTCGACTACTTCCACAATTTAAACGTTCACGTCAACAAACATTATCACAACTTCATCTGCTCGGAATGCGGGAAAACTTGCACGAGTCAAATGCGGCTCAACAACCATATTCAATCGACTCACGATAAATCCGGCAATAAGTTGAAATGCTCCAAGTGTGATGAAACATTCTCGACTCTATACAAGTCCCAGCAGCACATGACCTCCGCGCACGATATCCGCCGCCACAAGTGCCCTTACTGCACCGACACTTTCAAATACTTCAAACATAGGATAGCTCACCTCAACGACGTCCACGGAAAGAATATTACTTACCCCTGCAAGTTTTGCTCCAAGATTTTCAACAGCGCTTCGAACCGAGCCACGCATACTAAAGGAGTCCACATTAAAGAGAATCCAGTGCGATGTGAAGTGTGCGATCAAGTGTTCCACAGACTATACGTGTTGAAAAGACACATGCTCACACATAGCGGCACCAAAGAACATCAATGCCTCATATGTAACAAAGCATTCGGCAGAAAATATGCGTTAACACAACATATGCGTATACACAACAATGATAAAAGGTTTGTCTGCGTTCACTGTGGCAAAGCGTTCGTACAGAAATGTAATCTTAAAAGTCCGATCACCAAAAGGACCCCGTCGAGTTCACACTATGCGGATGAGCGTCATAACGCCAGCATTTTATTGGAGTTCTCTAACGCGTGCCcctttaaatattacaaaaacacgTTCGGTTGCGCGTACTGCCCCTTCAGGTCGCCGGACTTTACGCCGCTTAAAATGCACACGATGGAACATAAACTTAAATCCGCACAACTTCGTATTCTAAACACGAGTACGGTGTGTAAGGCAGACGTCTCTGATCTCAAGTGTGAAGTGTGTCAGGAACGCATGGCAGGAATATCACCGCTCTTTAAACACCTTCTCGAAGAACACAGGAAACCTCTTTACCCAAACCTCAAAACTGGCATTGTACCATATCTACTAAACGACGGATTCGCGTGCGCTGACTGCGGATTGAAATTCGATTACTTTCGCAATCTAAACATGCACGTTAGCGAACACAACATGAACTTTATATGCTCAGAATGCGGCAAAAGCTGCACTAGTCAAGAGCGTCTAAACTACCACATACTAACGCATAACAAAATATCCAAGCGATATAATTGCTCGAAGTGCGATCAAAGCTTCCcgactcaacacaaaaagaagaGACATCTGACGTCCGAGCACAATATATTCCCGTACAAATGCCCTTACTGCAACGACACGTTCAAATGGTTCAACGATAGGGTAGCGCATTTAAACGAAGCTCACGGGAAAAATATTAACTACCCCTGCCAATTCTGCCCAAAAGTATTCACTACGACTGCTAATAGATCCATACACACTCGATACACACACATCAAAGCCAATCCGGTTAGTTGTGAAATCTGTGGACACATGTTTCAAAGACTCGATGTGTTGAAAAGACACATGCTTAAGCATAATGGCTTGAAAGAACACCTGTGTCTAGTTTGCAATAAATCGTTTGGTAGAAAGTATGCTTTAACCGAGCATATGCGTATACACAACGATGATAGGAGATTTGTGTGTTTACAATGCGGCAAAGCTTTTATACAAAAATGCAGTCTGAAAGGCCCGACCGAGGACGAACGCAACAATGCAAGCATACTGTTGGAGTTCTCTAACGCGTGTCCATTCAAGTATAACAAAAGCATTTTCACTTGCGCCTACTGTCTGTACAAATCTCCCGATTTCACTTTACTAAAAGCACATACAAAAGAACATAGTTTCGATGCTACAGCGCTGTTTAATGTCAAAAGATTTACTATTTGGAAGGTGGACGTGTCGGATTTGAGATGCGAGGTGTGCCTCGAACCCATGACGGGCTTGAAGCCGCTATTCGAGCATCTAATCCAAGCTCACGACAAAGCTCTCAATAGGGATCTAAATACGGGTCTAGTGCCTTACTTACTGGACTCTGGGTTCGCTTGCGCCGACTGCGGCTTGCAGTTCGAGCATTTCCACAACTTAAACGTTCACGTGAACGAACACAACCTTAATTTTACCTGTTCTGAATGCGGCAAGAGTTGCACCAATCGCGACAGGTTACGCTTCCACGTGGCCACGCACAAAGAGAAGGAAGCGAAAGAGTACAAATGCAAAATATGCGGTGAAACCTTTGCCAATCAGAACAAAAGAAAATCTCATTCGTTGACTCAGCACAATATCTGCCCGTACAAGTGCCCGTATTGCTCTGACACTTTCAGACGCTTTGAAGACCGAGTGGCTCATCTAAACGCGCACCATGGAAGGAACATTAACTACCCGTGCAACTTCTGCTCTAAAGTGTTCTACAGCACAGCGAGCCAGGCGCGTCACATCAAATACGCCCATATTAAAGTAGACCCGATTCCTTGTCAAGTTTGCGGCCACACATTCCAGAGACCAAACGATCTGAAGCGACACATGATCAAACATACTGGAGTCAAAGACCACCAGTGCTTGGTCTGTGAAAAGAAATTCACAAGGAAAAGTGTGTTGAAAGAACATATGCGTATACACAATAATGATAGGCggtttgtgtgtgtttattgTGGGGAGGCGTTTATGCATAATTGTAGCCTCAAGGGGCACATCAAGAATCGACATCCGGACGTGGAGTGCGATTGA
- Protein Sequence
- MIWIFLFVLGPISKKCTTPSAQARDERDNAINIFKYSNASPFKYYKNTFGCAHCPFKSADFGPIKLHTREHRDTLVYKKKNLLTWKADVSGLCCELCKAHMADVPTLFDHLIEAHNKPLNRNFKPGIVPYLLDKGFACADCGQSFDYFHNLNVHVNKHYHNFICSECGKTCTSQMRLNNHIQSTHDKSGNKLKCSKCDETFSTLYKSQQHMTSAHDIRRHKCPYCTDTFKYFKHRIAHLNDVHGKNITYPCKFCSKIFNSASNRATHTKGVHIKENPVRCEVCDQVFHRLYVLKRHMLTHSGTKEHQCLICNKAFGRKYALTQHMRIHNNDKRFVCVHCGKAFVQKCNLKSPITKRTPSSSHYADERHNASILLEFSNACPFKYYKNTFGCAYCPFRSPDFTPLKMHTMEHKLKSAQLRILNTSTVCKADVSDLKCEVCQERMAGISPLFKHLLEEHRKPLYPNLKTGIVPYLLNDGFACADCGLKFDYFRNLNMHVSEHNMNFICSECGKSCTSQERLNYHILTHNKISKRYNCSKCDQSFPTQHKKKRHLTSEHNIFPYKCPYCNDTFKWFNDRVAHLNEAHGKNINYPCQFCPKVFTTTANRSIHTRYTHIKANPVSCEICGHMFQRLDVLKRHMLKHNGLKEHLCLVCNKSFGRKYALTEHMRIHNDDRRFVCLQCGKAFIQKCSLKGPTEDERNNASILLEFSNACPFKYNKSIFTCAYCLYKSPDFTLLKAHTKEHSFDATALFNVKRFTIWKVDVSDLRCEVCLEPMTGLKPLFEHLIQAHDKALNRDLNTGLVPYLLDSGFACADCGLQFEHFHNLNVHVNEHNLNFTCSECGKSCTNRDRLRFHVATHKEKEAKEYKCKICGETFANQNKRKSHSLTQHNICPYKCPYCSDTFRRFEDRVAHLNAHHGRNINYPCNFCSKVFYSTASQARHIKYAHIKVDPIPCQVCGHTFQRPNDLKRHMIKHTGVKDHQCLVCEKKFTRKSVLKEHMRIHNNDRRFVCVYCGEAFMHNCSLKGHIKNRHPDVECD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -