Mlit006417.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026809.1:11556780-11561240[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2.6 2e+02 3.3 0.0 2 23 14 36 13 36 0.88 2 24 0.00052 0.04 14.9 0.5 1 23 57 79 57 79 0.98 3 24 9.9e-07 7.7e-05 23.5 2.3 2 23 84 105 83 105 0.96 4 24 0.00012 0.0093 16.9 0.4 1 23 112 135 112 135 0.97 5 24 0.0062 0.48 11.5 1.8 1 23 140 163 140 163 0.95 6 24 0.001 0.08 14.0 1.4 1 23 169 192 169 192 0.95 7 24 0.00013 0.01 16.8 0.6 2 23 199 220 198 220 0.96 8 24 2.4e-06 0.00019 22.3 0.2 1 23 226 248 226 248 0.98 9 24 0.00048 0.037 15.0 0.7 1 23 388 410 388 410 0.97 10 24 5.1e-06 0.00039 21.3 1.5 1 23 414 437 414 437 0.97 11 24 0.0014 0.1 13.6 0.4 1 23 444 467 444 467 0.96 12 24 0.039 3 9.1 1.5 2 23 473 495 472 495 0.95 13 24 0.0015 0.11 13.5 1.8 1 23 501 524 501 524 0.98 14 24 0.0044 0.34 12.0 0.7 3 23 532 552 530 552 0.96 15 24 1.6e-07 1.2e-05 26.0 0.6 1 23 558 580 558 580 0.99 16 24 0.0014 0.11 13.6 2.9 1 23 586 608 586 609 0.95 17 24 0.94 73 4.7 1.6 1 23 664 686 664 686 0.95 18 24 9.8e-05 0.0075 17.2 2.5 1 23 752 774 752 774 0.98 19 24 4.1e-05 0.0032 18.4 2.5 1 23 778 800 778 800 0.97 20 24 0.21 16 6.8 0.3 1 22 807 828 807 830 0.87 21 24 0.0056 0.43 11.7 1.1 1 23 837 860 837 860 0.92 22 24 0.0089 0.69 11.1 0.2 1 23 866 889 866 889 0.97 23 24 0.0023 0.18 12.9 2.1 3 23 897 917 896 917 0.96 24 24 6.4e-07 5e-05 24.1 1.2 1 23 923 945 923 945 0.98
Sequence Information
- Coding Sequence
- ATGAATCGTAGCGTTTACAAAGTGGAAGTAAGTGATCTCAAATGCGAGCTCTGCGATACGCGAGTGACAGGCATCCCGGCACTATTCGAACATCTCATAGATGTTCACGACAAACCTCTCAATAGAAAGTACATAAACCGCTTTGTCCCTTACTTCCTAACCGATGGCTTCAAATGCGCCAATTGCGGTCAAACGTTCGATCTCTTCGGAAACTTGCGCATCCATGTCAGTAAACATTACGAGAACTGTATCTGTCCTAAATGCGGGAAAAGTTTCACAAGTAAATACGGTCTCAATTCCCATCTCTCAACACACGAGACGCCAGGAAAGAGTTATAAATGCGCCAAATGCGACAAATCTTTCCCATTGAGGTCCCAACGTGAAAGTCATATGATCGTCGAGCACAATAAGATTAAATATAAATGCCCGCATTGTACGGAAGGGTTCAGGTATTTCAAAGATCGAGTGAGACATCTGAACGCCGTTCACGGGAAGAGTATCGACTATCCTTGCAAGCTTTGCTCGAAAGTGTTCGATCACAGCGCTAAACGAACCAGGCACATACAAGACGTACATATTAAAGATAAGCCAATCAGCTGCGAAGTGTGCGGCGACCGCTTCCAGCGCCGAAGTAATCTAAAACAGCACATGGTAAAGCATAGCGAGAAGAAAGAGTATCGATGTCCAGTCTGTAACAAGGCGTTTGCGAGAAAGAACGGACTAACGCTACATGTGCGTGCGCATAACAATGATAAGAGATTCGTTTGCATCTATTGTGGGCAGACCACAGTATCAGTGGACCCCCGGCACCTGCCAATTAACGACGCCACGTGGACCAATGCGGGCTACTTGTTGGAGTGTTCCAACGCCTGCCCCTTCAAGTTCCAAACTAACTTGTTCGGCTGTGCGACTTGTCCCTTCCAATCGCCCGACTTTGAGCCCATCAGGCAGCACAGCCAAGAACACCAGTTCAAGCTCATAGCTCTCAGTAACTTGCGCGGCACAGTTTGTAAAATAGACGTCTCGGAGCTGAGATGTGAGATCTGTTACGAGCCCATGGCGGGCTTGCAAGGCCTGTTCGACCATCTTATCGAGGCTCACGACAAGCCCCTCGACCGACACTGCCAGCTCGGTCTCGTGCCTTATTTACTCAAAGACGGCTTCACTTGCGCCGATTGCGGCAGAAAGTTCGATTTCTTCACCAGTCTCAATATACACGTCAAAGAACATTACAAGAACTTTGTGTGCTCCGAATGTGGCAAGGGTTGCATCACCAAAGGCCAACTCAGAGACCACATGAAGAGAACGCACAAAAAGAAACGTAACGTGTTCAATTGCTTAGTTTGTGGCGAAACGTTCCCGTCGAACTACAAAAGAATGATGCACATGCAGTCTGTGCACAATATATACGCGAACAAGTGCCAGTATTGCTTCGAAACGTTCAAAACATTCAACCAGAAGATCGCTCATCTAAACCAAGTTCACGAAAAGAATATCAAATACCCTTGCAAATTTTGCACCGAAGTTTTCGAAAGCGCGTCCCACAAAATGAACCACGTGCGTCGGATGCATCTGAAAGACAAGATCTTTGGATGCGACGAATGCGAACTGAGATTCCCGACGAGATTCGAGTTGAACAAGCATAAAGTGAAACATAGCGGAATCAAAGCGTTCAAATGTGAAATCTGTGGCAAAGATTTCGGCAGAAAATTTACGTTGACGGCACACATGCGTATACATAATAAAGACAGGAGCTTCATTTGTGGGCTCTGTGGACAGGGATTTGTATATAAATGTAGTCTGAAGAGCCACGTGAGTACGCACCACCCCGGAGCTCAACTCATTGAAGGAGAAGGGAGCAGCATCTTGAGATCAATCACCGTAAACTGGGTCACAGACAAGTCAAAATCCAAGACTGGCGATTGGGACAATGCTAGCCTGCTATTGCAGTATTCTAACGCGTGCCTTTTTAGAAAGAAAGGGACGCAATACAGCTGTGCATACTGTTCGTTTAAAACACCTCACATTAGGTCCCTTAAAATACACAGTCAAGCGCACGAAGACAAGACTAAAGTTGTTAGTAGGTTCGATTATACATTTTGCAAAGTGGAAGTATCGAATCTAAAATGTAATGTTTGTGAAAGCCCCATGGATCGCATACAGTCTCTGTTTGATCATCTGATCGATGCTCACGCCATACCCCTAGATAGAAATAACAAACCTGGCCTCGTGCCTTACATCCTAGACGAGGGATACTACTGCGGGGATTGTGGCTTGAAGTTTACATTCTTCCACAGTTTGAATGTCCATATGAAAGAACATTACCAGAATTTCGTATGCACTCAATGCGGAAAGGGTTTCATTAATGAAAAAAACTTGAGGCACCATTCGTATACACACAGACAAATGGGGAACAGGTACAAATGCTTGATATGCGAAGAAAAATTTCCAACCATAGCcaaaaaacagaaacacagcgAGCTGGTTCACAACATCAAAGATTACAGTCACAAATGCCCCTACTGCGACGAAGCGTTCAAGTTTTTCAATCAAAAGAACGCTCATTTGATCGAAGTTCACGGAAAGGATATTAAATACCCCTGCGAGTTTTGTTCCGAGACTTTTATATCAGCCGACAGAAGGAAGAATCACGTACGCATCGTACATATAAACGAGAAACCCAATCATTGCGGCGAGTGCGGTTCCAGCTTCCGAACACATTGGGAACTGAGCAGCCACATGGTCATGCATACTGGAGCCAAAGATTTCAAATGTGGCATTTGTGGTAAAGCGTTTAGCAGGAAAGCTAGATTAAAGATTCATATGCATATACACGATAATGATCACCTAGGTGAAGATGCTAGCGTGGAAATACTGTCTGATGAGTTCGATTATGAATACGAATATATACCGTTAGAGTAG
- Protein Sequence
- MNRSVYKVEVSDLKCELCDTRVTGIPALFEHLIDVHDKPLNRKYINRFVPYFLTDGFKCANCGQTFDLFGNLRIHVSKHYENCICPKCGKSFTSKYGLNSHLSTHETPGKSYKCAKCDKSFPLRSQRESHMIVEHNKIKYKCPHCTEGFRYFKDRVRHLNAVHGKSIDYPCKLCSKVFDHSAKRTRHIQDVHIKDKPISCEVCGDRFQRRSNLKQHMVKHSEKKEYRCPVCNKAFARKNGLTLHVRAHNNDKRFVCIYCGQTTVSVDPRHLPINDATWTNAGYLLECSNACPFKFQTNLFGCATCPFQSPDFEPIRQHSQEHQFKLIALSNLRGTVCKIDVSELRCEICYEPMAGLQGLFDHLIEAHDKPLDRHCQLGLVPYLLKDGFTCADCGRKFDFFTSLNIHVKEHYKNFVCSECGKGCITKGQLRDHMKRTHKKKRNVFNCLVCGETFPSNYKRMMHMQSVHNIYANKCQYCFETFKTFNQKIAHLNQVHEKNIKYPCKFCTEVFESASHKMNHVRRMHLKDKIFGCDECELRFPTRFELNKHKVKHSGIKAFKCEICGKDFGRKFTLTAHMRIHNKDRSFICGLCGQGFVYKCSLKSHVSTHHPGAQLIEGEGSSILRSITVNWVTDKSKSKTGDWDNASLLLQYSNACLFRKKGTQYSCAYCSFKTPHIRSLKIHSQAHEDKTKVVSRFDYTFCKVEVSNLKCNVCESPMDRIQSLFDHLIDAHAIPLDRNNKPGLVPYILDEGYYCGDCGLKFTFFHSLNVHMKEHYQNFVCTQCGKGFINEKNLRHHSYTHRQMGNRYKCLICEEKFPTIAKKQKHSELVHNIKDYSHKCPYCDEAFKFFNQKNAHLIEVHGKDIKYPCEFCSETFISADRRKNHVRIVHINEKPNHCGECGSSFRTHWELSSHMVMHTGAKDFKCGICGKAFSRKARLKIHMHIHDNDHLGEDASVEILSDEFDYEYEYIPLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -