Mlit020368.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026825.1:10124279-10137846[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-06 0.0004 20.6 0.0 1 42 8 49 8 51 0.89 2 2 6.4 1.9e+03 -0.7 0.0 7 15 814 822 813 824 0.89
Sequence Information
- Coding Sequence
- ATGGCCCCAAAACGAGATTACACAAAGGAGCAGATGGCGAAAGCATTTGAAGAAGTTCAGCGAGGGGAGAAAGTTTCTGTAGCTGCTTCAAAATATAGCGTTCCACGAATAACACTTCGAAATAAGgttgaaaaagaaaatttacagGTAGCAGAAAAgaaaaacttcataaaaatcTTGGAGAAAGAAATACAAGATGTATATTCATCtgtgaaattgaatttattcaAAGAGCTATTTTACTTGCCAAGAGCTGAAGTAGAAAATATGTTGGCACCCGAAGATGAATCCCTTTTTGTTATCTGGGCTAAGAACAAAAGCATTGCGGCAGACGCGGATACTATTTCCGGAAACACCTCTGTTCAGCCAGAGTTGCTACAAGATGATTCCGTTCCGGATGCTAACTTAGCACCACCTGAAAAGTCTTCATTGACGCAAGAATATCCACAATCACGTTCAGGAGCCTCAGCAAACATTCCTGGAAACATCTCTACACAGTGTAAATACCCTGAGTCGCAGCATGAAGATTCCGTTTCTGATGTTGGTTCAGCACCATCCAAAGATTCGCAAGAAAATCCACAATCCAGCGTAAATACCCCTGGAAATATCTCTTCAAAATCTGAACAGCCAGAAATGCTACAAGAAATTTCTGTTTCTAATGGTGATCCAACACCAATCAACAATGTTTTGAACTCGCTTGTGAATTCAACACCTCAAAAAACTTCATCTTCTGTAATAATGCCAGTTGGTATAGAAGTTCCATCACCTTTCAAGCGAGCCTTACTCTGGCCAGAACCCGACAGTAAAAAAAGACGTACCAAGGAGCAATTACCATCTGCAATTACTGGGGATGCCTGGAGAGCTATAATGGCAAAAAAAGAAgctgaaaaagtacaaaaacaagaaGAGAAAGAACGCCGCAAACAGGAAAGACAAGAGAAAAAAATTCAGAGAGAAAAGATGATTGAAGAAAAGATGAAGACGAAgaaaaaaggcaaaaataaGACACAatccaaattaaaacaaaagaagaaaaaccCAATGCCAACGTCATCTACTGATGATTCAAATTCTGAGATAGAGTATGGTGACAGTGAATACGATGTACAAGACGAtttggaagaagaagaagattatgaaTTTAATCATAGACAGCTAACAGCgctgaaaaataatattgaaaaagGCCAGATTTTGAATCGAGTTCGCGATGTAGATCCAAACGACAGTGATGCAGTAAAAGAAGCTCTCTCAGCATTCTTCCAAAATCTTCCCAAACACAAGGATGGTGACTGCAATAGGTGGTTACGGGCGCTAGAAAACATTATCAACCGCTATCCAAAATACTGCGGCCAACATAGAATCACTATCGAAAACTACTTGTGCCATTTTTTGGACTCTAATAACTACTACAATGTAATTGAGGCGGCTAAATGTTCTCATGCAGTCCAACAGGTGAGGCCACAGCAAGAGAGAACAGCTTCTGCCAAGTCTTGCTGGAGGGACCAAATGGGTGCTCTCTGTGACGCAGCACAGACTCTCATCAGCACCATGTACACCAGGAGCTCCAGCATTTACAAGAATGGAAAAACAGCTaaaGATGACTCGCAAACTCTCGGATCCCCTTTACATGAAGCTCTATCAGTAATAGATGGAGTGACTAAGTCTAGCGATGTGACCAACAAGGCTGCAGTGCTGAGCATACGCCTCAGAAATGTACTGGTTTTTATACAGGCTATGCTTgtTGAAATCTACCCAGTGGCCAAACCAATCCGTCCACAGCAGATATTGGAAGTGATACTCCAGTCTCTCAGTGCGTCCGGCAATGAGGTCTCTACACAAGTCACAACAATCAAAGTACAGGCTCTCAAGACACTGGATGCTATTGTTGCTTGTTTGGGTTCGAATCTGATCCCGTTTTCAGCGCTAGTCTTCAGATTTGTGATGCAAACACTAAGATGGAGCTCGGAACATCCCACTGAAGAATCCAGAAAAGTCCGTTGTGCAGCGTACAGCAGTCTGTCCACCTGGCTCGGTACATTGATCTCCCACCGCGCGGCGGAGCTCGCTCGCAGCTGGCACGACGAGCTCACAGCACACGTGCTCGCCGACATCGCGCCCAGGCAACACGTTATACAACTCACGCCCAACGCTCAGCCGATGAAGAATCTCAGCAAGAAGGCTCGCAAGAAGCTCGCCAACTCTCTGTTGATGCAGAGCAACATGTCCGCGCACGCGCCCGGGGAGAGGAACAAAATACACGCGAGTGAAGAATCAGACGATGAGTTGGCGATAGCAGCTTTGGAATGTGTTGAAACATTTTTCACAACCTGCGGGGTGTTCTTGAAACCTACTACCTACAAGCAACTGCAAGAGCTCCTAGTCCGCGAGTGTTACAATCTCTCCCGCTACTCTCCCTCGCGCGCTCTGAGCCAGCTCCGCGCGCTGGAGGCCTGCAGGAAGGGTGCTTCGCCCCGCGCGCCCCCGCACACGCACCACTGCTTGCAGCTGTACAGCCAGTTGCTGCATAACTCTAGCCCTGAGATATCAAAGTTCGCGTCTCAAGCCCTCCTAGACATCCGCCTGCACGTGCACTGCTCCCCCTCGTCGCTTAACTTCGTGTGCGCGGCGGCGCCCGGACAGCACGCGGACAGGAAGCGCCTGTCAAACAGGAACCGAGCTGTGCTGGAGAGCTTGCTGGGGCAGGAGAGaATGCCATCAGAAGATCTAGCGGAAAAAGATGTAATTACAATCCCGGATGAGCCATCGAGCAAGAAAGCACGACTGGACCAAGACGTAACCGACAACATCAGCCTCAGCAGCGAATCACAGAACTCTATAGAAATATCAGATAGCTCTTCCGTAGAAGAGGTGGAAGACCAAGATGATTCCACAGATTATATCATCGAAATGGACAAAGACTACGAAATGCAAGAGACCGAACAGAGCAGTCAAGATTTAACAGATGCTGCCAAACCTGCCGATGAAAGCGACGCGACTGATGCTGAAGACGAACAAATAGAAACAGACGGAAAAACTGACGAAACTGACGCAAGGACAGCAGAAACTGACGGCAAAACTGATGAAACAGAACCAATATCTAATGAAGCTGATGACAAAACTGACGATGGCAGCATCAAACTCACTCAAAAAGACCCAGAAGCGGTTTCCAGTCAGGACTTCAACATATTCGAAGCTAGAACTCAGCTACCATTACAATATGACAACAATGGACAAACATCCCCCACGTTACCTTTATCTAGCGAAGTGTCATACGATTATCCAAGCACCGGTCAAGAGAAAGTCCAAGTGCTCGAGAAAATGGATGAAGACAATATACCAAGTACGAACGAATCTGACGATATTCCCATAGCATGCGGCCAAATTATGAAAAACTCGCAAGATGACGAACAAACTAAAGAAATCGAAGCAGATTCAAATGAAGCTCCGAAAGAAAATGGCGTAGATAAATCGCCAGAAAAGATTTTGGAGAATGGAGACGCAATTAGCGCAGAGATTGAAGGAACAGTGACAGCCAAAATTGTACCCAATGACGCTGAAATTACGGTCGAAGATATGTTGGCAGATTTTGTTGATGAAGTCAACGATGAGATTCAAACTCCTGCCCAGACTTAA
- Protein Sequence
- MAPKRDYTKEQMAKAFEEVQRGEKVSVAASKYSVPRITLRNKVEKENLQVAEKKNFIKILEKEIQDVYSSVKLNLFKELFYLPRAEVENMLAPEDESLFVIWAKNKSIAADADTISGNTSVQPELLQDDSVPDANLAPPEKSSLTQEYPQSRSGASANIPGNISTQCKYPESQHEDSVSDVGSAPSKDSQENPQSSVNTPGNISSKSEQPEMLQEISVSNGDPTPINNVLNSLVNSTPQKTSSSVIMPVGIEVPSPFKRALLWPEPDSKKRRTKEQLPSAITGDAWRAIMAKKEAEKVQKQEEKERRKQERQEKKIQREKMIEEKMKTKKKGKNKTQSKLKQKKKNPMPTSSTDDSNSEIEYGDSEYDVQDDLEEEEDYEFNHRQLTALKNNIEKGQILNRVRDVDPNDSDAVKEALSAFFQNLPKHKDGDCNRWLRALENIINRYPKYCGQHRITIENYLCHFLDSNNYYNVIEAAKCSHAVQQVRPQQERTASAKSCWRDQMGALCDAAQTLISTMYTRSSSIYKNGKTAKDDSQTLGSPLHEALSVIDGVTKSSDVTNKAAVLSIRLRNVLVFIQAMLVEIYPVAKPIRPQQILEVILQSLSASGNEVSTQVTTIKVQALKTLDAIVACLGSNLIPFSALVFRFVMQTLRWSSEHPTEESRKVRCAAYSSLSTWLGTLISHRAAELARSWHDELTAHVLADIAPRQHVIQLTPNAQPMKNLSKKARKKLANSLLMQSNMSAHAPGERNKIHASEESDDELAIAALECVETFFTTCGVFLKPTTYKQLQELLVRECYNLSRYSPSRALSQLRALEACRKGASPRAPPHTHHCLQLYSQLLHNSSPEISKFASQALLDIRLHVHCSPSSLNFVCAAAPGQHADRKRLSNRNRAVLESLLGQERMPSEDLAEKDVITIPDEPSSKKARLDQDVTDNISLSSESQNSIEISDSSSVEEVEDQDDSTDYIIEMDKDYEMQETEQSSQDLTDAAKPADESDATDAEDEQIETDGKTDETDARTAETDGKTDETEPISNEADDKTDDGSIKLTQKDPEAVSSQDFNIFEARTQLPLQYDNNGQTSPTLPLSSEVSYDYPSTGQEKVQVLEKMDEDNIPSTNESDDIPIACGQIMKNSQDDEQTKEIEADSNEAPKENGVDKSPEKILENGDAISAEIEGTVTAKIVPNDAEITVEDMLADFVDEVNDEIQTPAQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -