Mlit017656.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026822.1:4236917-4243268[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-05 0.0067 16.7 0.0 7 35 46 73 42 78 0.88 2 2 0.0026 0.77 10.1 0.0 6 34 209 236 207 247 0.80
Sequence Information
- Coding Sequence
- ATGGACCACGGCATACCTTTAAACATTCACGCAAGACCCCGTATCGTCGGCAGACGACCTAACGCAATCGTCAACATAGAAACAGACGTCTTTCAAGAGAAATCCTACAAACAATATTCGTCCCAACATCTGAGGGACGCTCTAATCGCAGTCAAAAAAGGTTACAGTGTATACGCAGCATCGAATAAGTATGGGGTTCCGAGGAAAACTTTGAGGAATTGGATGGAGAAGTATGATATAAAGAGTCAGTTCTCAAAAGGACGCCACTACGCGATAGCCAACGTACAATGCCAATACGACAGTCCAAGCGACACAGAGTGCGAAGACCGTGGGGCGGCGCCTTCCACGGACCACACGTACGGACGAGCGCAGGACAACAACAGTAACTGTGAACCACCAGCATTTATTATACAACAGAACCAAATGCGTGCAGACGCCAGCACGCTAACGAGCGTGATTCCACTAGCGCCGAAGATAATGACGATAGCGCCAGGCTACCCATCTGTCAACCTCATACAGGTGGCCGACCAGTCTGTTGATGCTAACTACGGACCTACTAGTaCAAACCCCCTGCCTGGCGAGTTCAGCATAAACAAGCGCATCCGTCGCAGCGAGTGCGtgctgcgcgccgccgccgacTGCGTGTCACGTGGTCTCACCTTCCAGACCGTGTCACGCCAGTTCAACATACCTATATCTACTATACGTTTCTTCATGGCGCGGAAAGGGATCTTACCGAGACGACGGCGGGGGAGGAGTACACATCCACAGGTGATACAATCTTCAAGCCCCGAACCTCCGTATCACATGCAGCATTACAAActgcccagcatgctggcctTGAAAGCGGACGACGAAGAACAACAAGAGTGA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRHYAIANVQCQYDSPSDTECEDRGAAPSTDHTYGRAQDNNSNCEPPAFIIQQNQMRADASTLTSVIPLAPKIMTIAPGYPSVNLIQVADQSVDANYGPTSTNPLPGEFSINKRIRRSECVLRAAADCVSRGLTFQTVSRQFNIPISTIRFFMARKGILPRRRRGRSTHPQVIQSSSPEPPYHMQHYKLPSMLALKADDEEQQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -