Mlit020741.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026826.1:3959618-3962778[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-09 1.2e-06 28.7 0.0 5 41 1 37 1 41 0.89
Sequence Information
- Coding Sequence
- ATGCAATCTGCAATAGCAGCAGTTAGAGAAAATCGCTTTAAAATTAGGGAAGCAGCGCGGCACTATGGAGTGCCACACAgtacattaataaacaaattaaaaggaaGAGTACCTGAGGTGAGAAAAATGGGTCGAGACACTTATTTCACCGTAGCCGAAGAAAACctattggaaaaatatataatagccaacgctaagaaaggaatacCACTGAAAAAAGAAACTTTGCTGGACACGGTGAAAAAAATTTTAGATGACGATGAAAGGGTTACTCCGTTCAAGAATAATCGACCGGGTAGGAAGTGGTTTGATTTGTATCTAAAAAGACATGTAGCTATTGGCCAAAGAAATGCAGAAAGTATATCAACAGCGCGAGCATTCGTATCTACCGATGATTTAAAAGAATGGCACAAATCTCTAGAAAAATATCTAGCGGAAGAAAATGCCCTTGATATACTTAACGAACCTGCCAGGATATTCAATGCAGATGAATCAGGATTTCAAACCTGCCCTGATTCTGGCAAAGTTCTTGGACCTGTAGGTATGAAAAATTTTTACGAAATCAAATCTGGCAAAGAAAAGGAACAATTAACAGTAATGGTGACTATTAATGCTGCCGGTCAAGTAGTTTCACCAATGATTGTCTATCCCCTAATGCGCATTTCGAAAGAAATAGCAATGAATATCCCGCAAGACTGGAGTATTGGAAAATCACCGAAAGGGTGGATGACTGGACCACTTTATTACGAGTTTATTGCCAATGTTTTTGACCCTTggctaaaaacaaataatatcaaaaagccAGTGTTGCTTCTAATAGATGGGCACCGCTCACATATGACACTGCAAGTGTCGCAGTACTGCGCGCTAAACCAGATTTTGGCCTATGCTCTTTTTCCGAACTCGACACACATAACACAACCAGCCAATGTGTCtgtgtttaaatgtttaaagaGCGGATGGAAGCATACTGTTGCcgagtataaaaaaacaaccggCAACAGACAAATTACTCGGTCTGGATTTGCTCCACTACTGGCCAAAGTTTTTGAAGAAAAAGTGACCTCAGACATCATTGCCAACGGTTTTAAAAGGTGCGGTATATATCCTTTTAATATAGACGCCATAGATTTTGCGAGGTGCATGGACCACAAAACCCGAAAAGTTTTACCTACGCTGGCGCCGGTATCAAACGTTGGTGTGGAAACGCTCTTGTTTTTTGAATCTTTTATGAAAAAAGGCAGAGCGCAAGAATTCAGACAAAGAAAAGAATGGAATGGAGACGAATCTGCTAAAGAATTGTTCGAGCTAAGACACAGTACACCGGAGTTCTGTTCCCCTCCCATCCGCTGCCGTGTGAGTCCTCTTGCGAAGTTAGTGTCTTTgatatga
- Protein Sequence
- MQSAIAAVRENRFKIREAARHYGVPHSTLINKLKGRVPEVRKMGRDTYFTVAEENLLEKYIIANAKKGIPLKKETLLDTVKKILDDDERVTPFKNNRPGRKWFDLYLKRHVAIGQRNAESISTARAFVSTDDLKEWHKSLEKYLAEENALDILNEPARIFNADESGFQTCPDSGKVLGPVGMKNFYEIKSGKEKEQLTVMVTINAAGQVVSPMIVYPLMRISKEIAMNIPQDWSIGKSPKGWMTGPLYYEFIANVFDPWLKTNNIKKPVLLLIDGHRSHMTLQVSQYCALNQILAYALFPNSTHITQPANVSVFKCLKSGWKHTVAEYKKTTGNRQITRSGFAPLLAKVFEEKVTSDIIANGFKRCGIYPFNIDAIDFARCMDHKTRKVLPTLAPVSNVGVETLLFFESFMKKGRAQEFRQRKEWNGDESAKELFELRHSTPEFCSPPIRCRVSPLAKLVSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091684;
- 90% Identity
- iTF_00935628; iTF_00935616;
- 80% Identity
- -