Lcor027064.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992057.1:5311688-5334062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 24 6.2 0.4 1 23 62 85 62 85 0.85 2 13 0.00077 0.065 14.4 1.0 1 23 182 205 182 205 0.95 3 13 0.14 12 7.2 0.2 2 20 243 261 242 263 0.91 4 13 5.3 4.5e+02 2.3 0.7 1 13 268 280 268 290 0.79 5 13 0.051 4.3 8.6 0.3 1 23 689 711 689 711 0.95 6 13 5.3 4.4e+02 2.3 0.5 2 23 717 738 716 738 0.92 7 13 0.79 67 4.9 3.4 3 23 830 850 830 850 0.95 8 13 0.0087 0.74 11.0 1.3 2 23 866 887 865 887 0.97 9 13 9.8e-07 8.3e-05 23.4 2.1 1 23 893 915 893 915 0.99 10 13 9.3e-06 0.00079 20.4 1.7 1 23 920 942 920 942 0.97 11 13 0.13 11 7.3 0.4 2 23 949 973 948 973 0.92 12 13 0.12 9.8 7.5 0.3 1 19 978 996 978 997 0.93 13 13 0.012 1 10.6 1.5 3 23 1010 1031 1009 1031 0.97
Sequence Information
- Coding Sequence
- ATGCAAATCCTCTCCAAGTTTGGGAATGTTGCCGATAATTACATATACATCTTGATGAAAAATTATGAGAACATACCAACAGTGCCAGACATTACTCACGTACAGATGGCTCTACAAAAGGTTCTCGAGGTATGGAATAACTGGTTTCTGAAGGATCCTTTAAACCGAGGGGCCCCCTTGCTGTACAAGTGTAAAGATTGCGGCTGGGCCTGGTGGCATCTAAATTCTTTTATGGAACACATCAGAAACATACACGAGCGTGAAAAGTGGAAGCTGAGATTCGAGTTCGAAGCGACCAATGGGGAGTCCTACATAGCCTTGAAAATATCAAATAAATTGGATAAATCTCTGCCGGCGGTGAGAATAGTGAACGCCCCATGCTGGAGGTGTGGCATGCTGCCCGGAGACAAGTATCGGAACTTCAACACAACCAGCCTGACGTACCACTGCCAGTGTGGGGTCCAATTCGCCATGTGCCACGAGTATCGCCTCCACCTGGACGTGTGCCCCAATGCCGTGCCCAAGGTCAAGAAGCTAGTAAACTACAAGTGCTACTTGTGCTTCCTGAGGTTCGACACACCCGAGGAACTGCAGCGGCACAGGCTCCTGTCCCACAGCGTGCGGTCAGACCTACCCGCGTCCTGGACGCCGGTCAAGAAGTGCGTTAACTGCTGCATGTCGCATATCGACGGCATAAGTGACTGTCCCGCCGTGAAGAGAATGGTGCCCTGCGGATTTTGTACGAAGATGTTCAGCACGAACACGGTGATGAATCTGCATCAGAGCTTCTCCCAAGAGAACTACAAGTGTAGGCTATGCGATGAAGTCCTTAAGAGGGAGTGTATGGAGATGCTGCACCTAGTAAAGCACACCTACAATTATATAGTGCTACTTAAGTGTATGATTTGCAATAGCAGTAATACATTCTTCCATAATGATACTGCATACAAAATACATCTCCTGAGCAAACACCCTGGTAGTGACCAACCCGCCATGAAGGTTCCAGTGCCACTGAAATGCCTTCAAGAATCGGGGTACAATGTGCAAACTCTCGAGACGGACAAAGTGGTTGTGCCACCAAGGTTGTCCCACACCTATGAGGTGGCAGTGACAATACACGCATGCAATGACCCTACTCATGTAATAACTAATGTCATCGTCAAAAACAAAACAGACGACAACTACATAACAAAAGAAAATAATACATCAAGTAAACCAATACACACTCATGAACCTCACAAAGAAGATGTTGTGAATTCTAATACCGAAGAAAAGGAGTTACACAATTCAAATGTTGAAAAACGATCAGACAACAAAGAGGATAGTGTCCCACAAAATAAGTGTGTAGTAAACCAAAAAGAATTAAACGTTAATACCAATAAAGATACTCAAGAGTGTGAAAAGAACAAAAACATCACTACAATAAAGGTTTTGGATAAACAAGGAATTAATAGCAGCAAAAAGAATGATTCGCATGAGAAAGACATCCCTATCGAAACCAGTATCAATCACAATGTACCTGATAAAGAAACACTCGACGGCAAACTAGTAATTGATAACCCTGGACCAAGTAAAACGATAAAAGTAGAGCAAGATAGATTAATAGGGAATGATGTTAAAATAAAAGAAGAAGTATTAGATGATGACACGGATGATGAAAAATTAGTAATAGCAGAATTCACTGACCTAATCACTGATAAATCTGTGACATTAGAAGTGAAAGCGGAGCCGCAAGAGATTTTTGAAAACGACATGATCGATTGGGGGAAGGGGATTGATAATACTGATAACGGGGATGTCGAGGTAGACGATGATCGAGAGAATTCTGGTGGATACATAACCTGGACTCCTCATCTGGGTGTTGTCAGAGGTGGTGTGAATATGGAAGAAGAGAGCGACGATGAGGATTTGCCCCTTATGGATATCAAGACGAAGAAAAAGAAGATGTACGCATGCAAGAGGTGTAAATTCAATGGATGTCACATGGAATACCAGGAACACAAAAAAATGTGTGTCAGACAAAAGAAATACAAGAAAAGGTTCTATCCGGAAGATTGTGACAAATACGAGTGTACGATATGCGAAAAACAGTTCGGAGCCCTGATCAAATACTTGAAGCATCTCACCGTGCATGGATACCAGTGGCTACAGTGTCCGGAGTGCATGGACAATTTCCCCACCAGGGCCAGACTGTCACAACACGTTTTACACCACATCAACAAGAACTACGTGCCGCTCCGGGGCATCACGTCAGCGAAAGACTATGGGTTTACGATGCAGTGCACCCAGTGTGACGATGAGGTGCAGCCGCACGAGTTCTTCAGACACTGGGAGCGACACCTGGCGTCGGCGCGGAGGTTGCAGAGGAAGCCCCCGCTCGTCATAGAGGATTGTGCACCACATTCACCCATGCTGAGAGATCTGATAGCGATACTTCTAGACCGCTACACCATCAGAGACGACGACGAGCACAAGCCGCTGCGGTGGTGCAAGATGTGCAATCGGCCGTTCACGCGGGACAACGAGTGTAAGCGGCACTACATTGAACACCTGCTCGACGACGCCTTCTCGCACATGTCTGACACCCAGGGGTTAAAGTGTCAGATCTGCGGGGAGATGTGGGAGAAGTGTAGCGATTTCCGCCTCCACATCCGCACGCACGCGTCGATGCCGGTGTACCGGTGTGAGCTGTGCAGCAAGACGTTCAGTGACTCCAGCAACTTCGCCAAGCACCGCAAGGTGCACAACCTGTGCAGCTTCACCTGTGACAAGTGCGGGAAGAAGTTCAATAGGAAGATATCGCTCGTAGAACATATCAAGTTCCATGAGCAAACGCAGCCGATAACTTGCGAGTTCGAGGGGTGCTCCAAACTGTCGTACACGCAGAGCGCTTTCACCAAGCACCTGAAACTCGTTCACTACGGCTCCAAGTACCGCTGCCAGATATGCAAGAAGACACTCGGCAGCAACAAGGAGATGTGGGATCATAAGTGGCAGGAACACAGGTTGCGGAAAGTGATAGCGGACTGTCCAATCTGCCATATGCAGTTCCGGAAGTATTTGGACGTGAAGAAGCACGTTCGGAGAGTGCACGCCGATTTACCCGACCTCAAGAAACTCAACAAACTCTCGCCCGAGGAGAAGATCGGCAACGTCGCACGTCTCGTACACGATGTCAGACTAGACGCCGAGCGGATCAACAAACTCTCGCCCGAGGAGAACGGCAACGTCGCACGTCTCGTACACGGTGTCATACTAGACCCCGAGTCAGAAGAGGACATTATAAAGATAGAGATAGAAGATATTTAA
- Protein Sequence
- MQILSKFGNVADNYIYILMKNYENIPTVPDITHVQMALQKVLEVWNNWFLKDPLNRGAPLLYKCKDCGWAWWHLNSFMEHIRNIHEREKWKLRFEFEATNGESYIALKISNKLDKSLPAVRIVNAPCWRCGMLPGDKYRNFNTTSLTYHCQCGVQFAMCHEYRLHLDVCPNAVPKVKKLVNYKCYLCFLRFDTPEELQRHRLLSHSVRSDLPASWTPVKKCVNCCMSHIDGISDCPAVKRMVPCGFCTKMFSTNTVMNLHQSFSQENYKCRLCDEVLKRECMEMLHLVKHTYNYIVLLKCMICNSSNTFFHNDTAYKIHLLSKHPGSDQPAMKVPVPLKCLQESGYNVQTLETDKVVVPPRLSHTYEVAVTIHACNDPTHVITNVIVKNKTDDNYITKENNTSSKPIHTHEPHKEDVVNSNTEEKELHNSNVEKRSDNKEDSVPQNKCVVNQKELNVNTNKDTQECEKNKNITTIKVLDKQGINSSKKNDSHEKDIPIETSINHNVPDKETLDGKLVIDNPGPSKTIKVEQDRLIGNDVKIKEEVLDDDTDDEKLVIAEFTDLITDKSVTLEVKAEPQEIFENDMIDWGKGIDNTDNGDVEVDDDRENSGGYITWTPHLGVVRGGVNMEEESDDEDLPLMDIKTKKKKMYACKRCKFNGCHMEYQEHKKMCVRQKKYKKRFYPEDCDKYECTICEKQFGALIKYLKHLTVHGYQWLQCPECMDNFPTRARLSQHVLHHINKNYVPLRGITSAKDYGFTMQCTQCDDEVQPHEFFRHWERHLASARRLQRKPPLVIEDCAPHSPMLRDLIAILLDRYTIRDDDEHKPLRWCKMCNRPFTRDNECKRHYIEHLLDDAFSHMSDTQGLKCQICGEMWEKCSDFRLHIRTHASMPVYRCELCSKTFSDSSNFAKHRKVHNLCSFTCDKCGKKFNRKISLVEHIKFHEQTQPITCEFEGCSKLSYTQSAFTKHLKLVHYGSKYRCQICKKTLGSNKEMWDHKWQEHRLRKVIADCPICHMQFRKYLDVKKHVRRVHADLPDLKKLNKLSPEEKIGNVARLVHDVRLDAERINKLSPEENGNVARLVHGVILDPESEEDIIKIEIEDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -