Lcor001432.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992068.1:3786908-3795182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00015 0.013 16.6 2.4 1 23 288 311 288 311 0.97 2 10 0.041 3.5 8.9 3.4 1 23 318 340 318 340 0.97 3 10 0.068 5.8 8.2 0.9 1 19 344 362 344 366 0.95 4 10 0.0001 0.0087 17.1 5.1 2 23 372 394 371 394 0.97 5 10 0.0039 0.33 12.1 0.7 1 23 398 421 398 421 0.93 6 10 0.28 23 6.3 1.0 2 20 442 460 441 462 0.91 7 10 0.0032 0.27 12.4 1.7 2 23 485 507 484 507 0.94 8 10 0.44 37 5.7 0.5 1 23 522 544 522 544 0.93 9 10 0.00029 0.024 15.7 0.7 2 23 551 572 550 572 0.91 10 10 0.00026 0.022 15.8 7.4 1 23 578 601 578 601 0.98
Sequence Information
- Coding Sequence
- ATGACTCACCTGAAAATATGTAGGATATGCCTTCTAACAGAGGCAAAAATGTTCAAAATAAATGTGTGCAACTTGCAGTTGTACTACGAAGAAGTTCTGGAACATAAAGTTGGTGATGATGACAAACTTCCACAATATTTTTGCTATGAGTGTGCTTCACTCTTACACAAGTATCACAATTTTAGGCAAAAATGCTTTATAGGTCAGAAAATTCTGACGGATATGAAGGGAGAAATCACCTATGAATCCATTTATAATGTGGACAGAAAGAAATTAAAACTTATATCTTCATTAGATATGATTCACAATATTGAAGCTGATATAATTTTACCTGCTGTTGATAAAAACAAACAAAGAAATGCATTAAAAAGAAATAAAAAATCAAATCACCATAAAGAGGAACTCAGAGAAAAAGTTAAAAAAGAAACACAATATTTAGAACATGTTTCAGTTGATCTAGATAAGGTGTTTTGTAAAGCTCAAGTGCTAATTAAAACTGAAAACAATATTGAATTTCCCCTACAACTAGAAGATGAAAACTCTCTAGGCAGTGTGGACGGTGATCATCTATTAATTGACAGTATTTGCACAGAAAATATTGAATCAAAAGATCCAGTAAACCAAGCAGGTGTATTTATAGTAACGGATGACAACAAAGATGTGACTGTAAAAAAATTAAAAGCTAGACAACTTAAGAGAACAAAATGTAATATTGCAAAATCTAAATCAAATAAAAAGGGCGCTTGGAAATTGAGAGAGCTATTGAAAGAAGGTAATTGGAAAATGACAACAATGTCCGAAGAAGAATCATTGCAGACTTTTCGTGCAAAATCACAGTGTGAAAAGTATATCTCTGCAAAATATAAATGCACAGACTGTTTCATCTTTTTTTCTAACAATGAAATGTACACGAGGCACCGTCTAAGATGGCATACTGAGGCGAATAATCCATATGAGTGTCGCTTTTGCAAGCAACGTTTTAGGGTTAATTTTGAGATTAGAAACCACTTGAAATTTCATTACAACAAGTTTGAATGTCTCAGATGCAACTTGGTCTGTTCACGAGAATCCACCTTATTAGCACACGATGCTTATCACAACGGAAAAATAAAAAAGTGTGAACATTGTAATGAGGAATTTCGGCACCAGTCAACCTATTACACCCACATTCGTACAGCGCATAGGAGTAAATATCTGTGCAATTTGTGCGGGCGTTCCTTTGTGAATGAGTTGGGCATGAGACAGCACAAGTTGAGAAAACACCCTGAAGCGAAGACCATCGGATCTAAGGAACCGTTAGATGTCAACAAGGATGTGAATACTTACTGTTCCACCTGCGACATCAAATTTGAGACGGAGGATGCTTACCATGAACACAAACTTCACTCTTCCAAACATGTTGATAGTAACATTATAATACCCGAACGCAAAATAAAACGAAAAATTCCCACAGAATGTCCAAAGTGTGGAAAACAGTTTGATTCACAAGCGGCTTGCATGAAGCATTACAAGAATGAACATCCAAATGACAAGTTCATTCCCTACCCCGAACTTGAGAGGAAGCATGTCTGTGAACTGTGCGGTGCTACTGTGTTGTATAAGAATTTAAAAATCCATTTGATGAATACACATGAGAAGAAAAATGCGTGCTACTGCAACATTTGCGGTAAAAAATTCAGTTCGGGAGGCGCATTGAAGATTCATAGTGTGGTGCACACTGGCGAAAAGCCCTACAAGTGTACGCTATGCGACAAACGCTTCACGCAGAAATGCAGCATGAAGCTGCACTATAAGACATTCCATCTAAAAGAGCCGTATCCTAAAAGGTAA
- Protein Sequence
- MTHLKICRICLLTEAKMFKINVCNLQLYYEEVLEHKVGDDDKLPQYFCYECASLLHKYHNFRQKCFIGQKILTDMKGEITYESIYNVDRKKLKLISSLDMIHNIEADIILPAVDKNKQRNALKRNKKSNHHKEELREKVKKETQYLEHVSVDLDKVFCKAQVLIKTENNIEFPLQLEDENSLGSVDGDHLLIDSICTENIESKDPVNQAGVFIVTDDNKDVTVKKLKARQLKRTKCNIAKSKSNKKGAWKLRELLKEGNWKMTTMSEEESLQTFRAKSQCEKYISAKYKCTDCFIFFSNNEMYTRHRLRWHTEANNPYECRFCKQRFRVNFEIRNHLKFHYNKFECLRCNLVCSRESTLLAHDAYHNGKIKKCEHCNEEFRHQSTYYTHIRTAHRSKYLCNLCGRSFVNELGMRQHKLRKHPEAKTIGSKEPLDVNKDVNTYCSTCDIKFETEDAYHEHKLHSSKHVDSNIIIPERKIKRKIPTECPKCGKQFDSQAACMKHYKNEHPNDKFIPYPELERKHVCELCGATVLYKNLKIHLMNTHEKKNACYCNICGKKFSSGGALKIHSVVHTGEKPYKCTLCDKRFTQKCSMKLHYKTFHLKEPYPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406239;
- 90% Identity
- iTF_00164844;
- 80% Identity
- -