Basic Information

Insect: Lysandra coridon
Gene Symbol: BCL11A
Assembly: GCA_905220515.1
Location: HG992105.1:3878388-3886278[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5.2 4.4e+02 2.3 1.1 1 23 525 548 525 548 0.93

2 6 6e-05 0.005 17.8 4.1 1 23 815 837 815 837 0.98

3 6 6.2e-07 5.3e-05 24.1 1.4 1 23 843 865 843 865 0.99

4 6 1.3e-06 0.00011 23.0 3.2 2 23 1083 1104 1082 1104 0.97

5 6 1.7e-05 0.0015 19.5 3.3 1 23 1110 1132 1110 1132 0.99

6 6 0.00011 0.0094 17.0 0.4 1 22 1140 1161 1140 1161 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5.2	4.4e+02	2.3	1.1	1	23	525	548	525	548	0.93
2	6	6e-05	0.005	17.8	4.1	1	23	815	837	815	837	0.98
3	6	6.2e-07	5.3e-05	24.1	1.4	1	23	843	865	843	865	0.99
4	6	1.3e-06	0.00011	23.0	3.2	2	23	1083	1104	1082	1104	0.97
5	6	1.7e-05	0.0015	19.5	3.3	1	23	1110	1132	1110	1132	0.99
6	6	0.00011	0.0094	17.0	0.4	1	22	1140	1161	1140	1161	0.97

Sequence Information

Coding Sequence: ATGCCATTGACTCCGAGAGACGACTTCAAGGGGAGTGTCAGGACAAGGGCACAGCGAGCTGCTGCCATCGACTTCGAGAGAGGGGCTCCACCCACTTCGGGTGAAGCTACGCCCACGGGCTCCGCCCACCGGGGCCCGCCCACTGACCACGCCCCTCAGGCCCCGCCCACTCTGGACATGGCCACGCCCACTGGCTCCGCCCACCAGGCCACGCCCACTCAGGCCACGCCCACTGGCTCCGCCCACCAGGCCACGCCCACTCAGGCCCCGTCGACTAGCTACATCCATCCTGCCACGCCCGTAGTTTCTACGGCCCCTCAAATGGCTCCTCAATTGGAAAGCATAATTGAGTTAATGCAGGCTTTGCAAAATTCTCAAAGGGCAATGATGGAGTCTCAAGAGCAACAAAAGGACCTCCAAGAAAAGGCGCTTCTAGCTATAAAGGATGTCAGTGACACGGTGACAAAGCTTCGGAAAGATGTCGATGTTATGGAAGAACGAGTTACCGGGCTAGGAGTGGATATGGAAAATGTGAAAACTGGCCTCACAGAACTACAGAAGTGGAAAGTGCGCCTGGAAACCACAGGAGTCCCGACGTCTAGTGGAACTACCGGAGTAGTGGTACAAGCGCCAAGAGTTAAAGTGCCACCATACGACGGTACTACTTCATGGAACGCTTATCGTCAGCAATTCCAGACGGTTGCTTCTGCCAACGGATGGACTGACGAACAATGCCTGACCGCTCTCACTGTTGCGCTCAGAGGGCAAGCTTTGTCGGTCCTAGAAGTACATACAGGGAAGGGGTTCCAAGACCTGATGGAGGCCCTTGAATCCAGATACGGGGAGCGACACCTGGAGCACGTGTTCCGTGCTCAACTTCGTGACAGAGTCCAACGCTCAGGAGAGGGACTACAGCAATGGGCGTTGGAAATTGAAAAACTGGTCAAGAAGGCACACCCAGGAGCCGATTCCAAGATGGTCGACACGAATATTGTGCAAGCATTTGTCGACGGAATCAGGGATCTGGAGGTCAGAGCTGCAGTGAGGCTACGTCACCACACCTCGCTAAAGGAAGCGTTGGCGCATGCTTTGGAGGTCGAGGCTGTTCGCCATGAGATACAGCAGACCCATAAGATCCGCAAGGTCTCCGAAGTAAAGGCTCCTGCAAGGAAAATATTTGAAGCCATGTGCTATAAGTGCGGGAAGAGGGGCCATCTTCAGCTCAACTGCCCGCAGAAGGAGACCCAGATGTCAAGGATGAAAAGGCTCGAGCAACAAGTAGAGGAGCTGAAGAAGCAGGGAGCTTCAGCCAGGACTAAGAGGCGTGTACTGGCTGACGCGGAGGAAGCCCCAATAACTGTTGTCTCCCAAGCAAGCAGCAACTACGGATTAGTGACTGAGCTACTCGACGACTGCAAGAGTAATCTGACTTATTCGCAGAGCATGAAAGCTAAGAAGTTTTTACAACGCCACGCGAATATCTTCTCCAGTCAGGAAGGCGACCTTGGAAGAACGTCGATGGTTCAGCACAGGATAGATACTGGAAACGAGAACCCAATTCAGCCGAGCAACTACGTGTGTTCGACGTGCAAGGCGCGCGTTCACTCCGCGTGGCGGCTGGTCCAGCACGTCCAGCATGTGCACGGCGTCAAGATCTACGTAGAGAGCATGCCGCAGCCACCGCAGAACAAGCAGAACCACTCCTCGTCCAGCACATCATCCTCCAGCTCTTGTTCGTCGTCAGGAGCGCCACTCCCGCCGCCATCTCTTCGTCATCACCCGCTTCTACCGCCCCCGGATATGCACTCCCCTTTTGGGGTTGGTGGTCTATTGCGCATGCCCTTGCCCGGCAGCTTGCCCCCGCTCGCCCACCCTTCTGTCCCCCCAAACCCTCTGTTCGCCCGCCCAAACCATCACGATCATAGATTTCGCATGGAGCAGCTCGTCTCCGAGCAGTTCCGTCACCACGGGTTGAACCTGGCGGCAGCCGCGGCCGCGGCCGTCGCCGCCAACTCCCTCCCCCCTCATCAGCCATTTCCATCACCAGCGGATAGACCACCGGTAGTACCAAACTCACTTACGGGGCGAGACCGAGCACCCCCCGTATCTCAACCCCTATCTTTAGAACCCCAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCACATCGAGCTCTCCTAGCCCCAGGAAGCATTCGCCGCCGTTCGCTTCCCCGTCGCCCTCCCGAGTCGGCCAGACTCCTCCGGTGGGCGCCGGACCCGGGACGGTGGAAACTCCTAAGGAGGCTATAAGGGCGCACAGTTCCCTGTCACCCGAACGACGGGTGGAACCGCAGACTGCGGACGCGCCGCCCTCGGATCGACCGTCGTCGACGCCACTGACGAAAAGAACCAACGATGAGGCTGTACATTCCTGTGAATTTTGCGGTAAGAAGTTCCGTTACGAAAATAGCTTGATCACCCACCGTCGCACTCACACCGGAGAGAAACCTTTCAAATGCACCGAATGTGACGAAGCTTTTGAAAAGTCTTCAAAACTAAAGAAACACATGAAAGTTCATCGAGGTTCCGGTGGTAACACCGAGGAGGGTGATTCGGGCCCCGATACTGGAGATGATGAATCAGAGGACGAGTTGGATGACGAGGAATTAGATGGAGAGGAGGAGGAGGAAAACGAAGACGGCGATGACATCGAGGAGGCTGAGGATCTCACTGTCTCAAACAGTAGCGCACCCGCTCCCACACAACGAAAACAGACCTCCGCTGCACCCACGCAACCTCCATCGGCCTCTGTGGTTGGTGAGCTGATGGATAAATTTGGATTGTCGAACATTGCTCAATATAGTGAAGCTTTTAAGCAGGCACTACAAGAATCTGGCAATTCCCTAAAGTGGCAGTTGGCTAAGGACCGCGATAACAATAATGGTCCTTCAGCCGACAAGCCGAACGGGATGCCCCCGACGGCTGCTCTGCGTCTAAAAGAAGAATTCGCTAAGATGCCACCTCAACCTCATCCGCTGTTCAACCCTTTTGAGAACCCTTTTGAGGCATCCAAGCGAATGAAACTAGAGATGGACAGAGGCGAGGGCTGGTGGCTGCCAACGTTACACGCTCAACGCCCACCTGAAAACATTTTTGATGGTCTCAAGAACAGCAGCAATGGGATGTTACAAAATCCGTTACTGAAGTCAAAGGATGGACGTCGCAACGACACCTGTGAATTTTGCGGCAAGGTTTTCAAAAACTGCTCCAACTTGACGGTTCACCGTCGATCTCACACTGGAGAGAAGCCCTACAAATGCGAGCTGTGCTCGTACGCCTGCGCCCAGAGCTCCAAGCTGACGAGGCATATGAAGACCCACGGTCGCCTCGGCAAGGACGTGTACAGGTGTCGGTTCTGCGAGATGCCGTTCTCCGTACCGTCGACCCTCGAAAAACATATGCGGAAGTGTGTAGTGAATCAAAGTAACGGTGCACCTCTCGCATTATCCGACGATTCCAATGCATGTCGTGATGAGGCGTCGTGA
Protein Sequence: MPLTPRDDFKGSVRTRAQRAAAIDFERGAPPTSGEATPTGSAHRGPPTDHAPQAPPTLDMATPTGSAHQATPTQATPTGSAHQATPTQAPSTSYIHPATPVVSTAPQMAPQLESIIELMQALQNSQRAMMESQEQQKDLQEKALLAIKDVSDTVTKLRKDVDVMEERVTGLGVDMENVKTGLTELQKWKVRLETTGVPTSSGTTGVVVQAPRVKVPPYDGTTSWNAYRQQFQTVASANGWTDEQCLTALTVALRGQALSVLEVHTGKGFQDLMEALESRYGERHLEHVFRAQLRDRVQRSGEGLQQWALEIEKLVKKAHPGADSKMVDTNIVQAFVDGIRDLEVRAAVRLRHHTSLKEALAHALEVEAVRHEIQQTHKIRKVSEVKAPARKIFEAMCYKCGKRGHLQLNCPQKETQMSRMKRLEQQVEELKKQGASARTKRRVLADAEEAPITVVSQASSNYGLVTELLDDCKSNLTYSQSMKAKKFLQRHANIFSSQEGDLGRTSMVQHRIDTGNENPIQPSNYVCSTCKARVHSAWRLVQHVQHVHGVKIYVESMPQPPQNKQNHSSSSTSSSSSCSSSGAPLPPPSLRHHPLLPPPDMHSPFGVGGLLRMPLPGSLPPLAHPSVPPNPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAAVAANSLPPHQPFPSPADRPPVVPNSLTGRDRAPPVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGTSSSPSPRKHSPPFASPSPSRVGQTPPVGAGPGTVETPKEAIRAHSSLSPERRVEPQTADAPPSDRPSSTPLTKRTNDEAVHSCEFCGKKFRYENSLITHRRTHTGEKPFKCTECDEAFEKSSKLKKHMKVHRGSGGNTEEGDSGPDTGDDESEDELDDEELDGEEEEENEDGDDIEEAEDLTVSNSSAPAPTQRKQTSAAPTQPPSASVVGELMDKFGLSNIAQYSEAFKQALQESGNSLKWQLAKDRDNNNGPSADKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRMKLEMDRGEGWWLPTLHAQRPPENIFDGLKNSSNGMLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -