Lcor027152.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992057.1:6655558-6685928[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.53 45 5.4 5.6 1 23 98 120 98 120 0.98 2 11 1.1 91 4.5 0.6 1 23 127 150 127 150 0.93 3 11 0.14 12 7.2 1.9 1 23 154 176 154 176 0.94 4 11 0.00066 0.056 14.6 2.2 2 23 182 204 181 204 0.97 5 11 0.0016 0.14 13.3 1.1 1 23 208 231 208 231 0.91 6 11 0.06 5 8.4 0.2 3 21 244 262 243 267 0.92 7 11 0.38 32 5.9 0.2 1 23 300 322 300 322 0.93 8 11 1.6e-06 0.00013 22.8 0.6 2 23 336 357 335 357 0.97 9 11 0.14 12 7.2 6.0 5 23 365 383 364 383 0.97 10 11 0.00011 0.0096 17.0 3.0 1 23 392 415 392 415 0.94 11 11 0.00032 0.027 15.6 0.2 1 23 421 444 421 444 0.96
Sequence Information
- Coding Sequence
- ATGAGTGAAAACAACCAACCAGTGCTTAAACCTCTAAACGGTAGAAAGAAGAGCAAGATGAAGCCTGTAGAAGAAGTTAAAGAACAGAAAGTGGAGAAAATGAAAGAGAAGAAAGAATCTGTATATGAAATCATGATTCGCTTATTGGGAAGCGACTTTTTTAAGCCTTCAAAACGCCCCAAGCGTGTAGAGGTGGATCAGAAGATGATAACTGTCACCAAGTTGACATTGAAGCAAGCGGTGCAGGAGTTGAAAAAGAGGAAGGAGAAAATTGGATACAAGGAAGCAAGATACCACTGCCAGTTTTGCCATCGCTACTATGATTCCGCACTGAAGTTTGAGGAGCACATGCAGAGTCATGATGAGTCGCATGGTCCGCATGAGTGTGCAGTCTGCAAAATACGCATGAAGTCGAAGTTGACGCTCGACAAGCATATGGAAGGCCTGCACAAGAGGAAGTACTCCTGTAAGATTTGCCCGTTCACCACCACTTACAGGCACGCTGCCATCAAGCATACAGCTTTTCACAAGGGGCTCAAGAACAAATGTCCGCACTGCTCCAAGGAGTTCGCCAAAGTGTCGACGTACGAGCAACACGTGCGTCGGAACCACCCCGCGCGTCACGCGTGCGCGCACTGCGGTTACACGTTCGTCAGCGAGCGCGGATTAAAAACGCACGCGACCATAATGCACCGTTCCGATGGGGAGGTGCCGCTATTTGGTCCGTTCTGTGATGTGTGCGAAAAACAGTTCGTATCTGAGGAGGCTTTCGACCGACACCTGGAGATGTCCTCGCTACACAACAACGAGAACACACTGAAACAGCCTAATGCACCAAAGAGCACCAGTACGATATTGCGTCATGCCGAAATGATGAAGAGATACAAGGATAGGACATATCCCTGCGAAGAGTGTGGCCTAGAGCTGGCGAAGAGGAACTACATCAAGCACTTCCGGAGCGCACATCCCGGCAAGCAGAGCAACCGCTTCAACGTGAAAGCAGTCGAGTGCAACCTCTGCGGCAAAACGTTTAATAGCAAGCCCTATCTGTACACGCACATGCAAACGCATGGCGAGCCCCGGTACATATGCGAGTGCGGCAAAAAGTTCCACGTCCACAACAACTTAAAGTTGCACCGCAAGACGCACCTGCCGCGCGAGCTGCGCACGACGCACGCGTGCCACCTGTGTGACACCACCTTTACACTGAAGCAGAACTTGCAGAGACATCTCGCAGTGACGCACCCGGGCTTGAAGCCGTTTCCATGCGACGTGTGCGGGAAGTCATATACGGCGAAGAGCGTGCTACAGGGGCACATTAACCACGTACACCTGAAGATACCGCGGCCCCCGCGCGAACCCCGCCGCCAACGACGCCCTGGCCGTAAAATTAGTGCCCCTGCCCACGAGATTTTAGGCCGTGATTACGAGATTATTAGAGCCACCAACGACTTGACTAGAGGCCCCGACCACGAGATAATAGGCCCCGATTACGCGATCACATCCATCGACCATGACATGCGAGGCCGCAATTACGAAATTAGAGGCACTAACCACGAGATGAGAAGCCCCGATTGCGAGATTAGAGGCCCCGATTACGAGATTCGAGGCCCCGATTACGAGATTCGAGGCACCGACCACGAGATAAGAGGCTCTAATCGCACGGAGATGAAACGCTCCAACCAAGAAATAAGAATCCCCGGCAACAAGATAAAAGGTCTCAGCCGCAAAGAGATGAGAGGCCAAGACTGTGATGTGGGAGGTACCGATCATGAAATTAGAGGCCGCGCCCATGAAAAGAGAGGCCCCGATCAAGGTCACCGACCACGAGCACGCAGACGAAGCCCAGACCAAGAAATACAGGGCCTCCTAGTAAAAAAGTCCAATTCAAACAACAGAAACGGAGGCCCCGACCACCAAATACAAGGTCTCCTGGTAAGAAGTTCCAATTCCAACAACAAAAAGGGAGGCCTCGACCACGAAATACAAGGCTTCCTTGTAAAAAATTTAAATTCCAACAACATAAACAGAGGCCCCGACCACAAAATAAGAGCCTCTAATCACAGGGGCCCCAACAAAGATAAAGGCCCCCAACGCGTAGTCAGAAACTCCTATAACACAAGTTTACGCCCGCAACACGATATGAGAGAATATGACCACGTAGACACGTTAGGTATGTATTATTGTTTTAACGTTTTAAGTCTGCCCGACAGTCTGGTCGACAGTCTGCCTGACAGTCTGACCGACAGTCTGGTCGACAGTCTGCCCGACAGTCTGCCCGACAGTCTGGTCGACAGTCTGGTCGTCAGTCTGCCCGACAGTCTGGTCGACAGTCTGCCCGACAGTCTGCCCGACAGTCTGGTTGACAGTCTGGTCGACAGTCTGCCCGTCAGTCTGGTCGACAGTCTAGTCGACAGTTTGGTCGGCAGTCTGCCCGACAGTCTGCCCGACAGTCTGCCCGACAGTCTGGTCGACAGTCTGCCCGACAGTCTGATCGACAGTCTGCCCGACAGTCTGGTCGACAGTCTGCCCAACAGTCTGGTCGACAGTCTGCCCGACAGTCTGGTTGACAGTCTGGTCGACAGTCTGCCCGACAGTCTGCTCGACAGTCTGCCCGACAGTCTGCTCGACAGTCTGCCCGACAGTCTACCCGACAGTCTGGTCGACAGTCTGGTCGAAAGTCTGATTTAA
- Protein Sequence
- MSENNQPVLKPLNGRKKSKMKPVEEVKEQKVEKMKEKKESVYEIMIRLLGSDFFKPSKRPKRVEVDQKMITVTKLTLKQAVQELKKRKEKIGYKEARYHCQFCHRYYDSALKFEEHMQSHDESHGPHECAVCKIRMKSKLTLDKHMEGLHKRKYSCKICPFTTTYRHAAIKHTAFHKGLKNKCPHCSKEFAKVSTYEQHVRRNHPARHACAHCGYTFVSERGLKTHATIMHRSDGEVPLFGPFCDVCEKQFVSEEAFDRHLEMSSLHNNENTLKQPNAPKSTSTILRHAEMMKRYKDRTYPCEECGLELAKRNYIKHFRSAHPGKQSNRFNVKAVECNLCGKTFNSKPYLYTHMQTHGEPRYICECGKKFHVHNNLKLHRKTHLPRELRTTHACHLCDTTFTLKQNLQRHLAVTHPGLKPFPCDVCGKSYTAKSVLQGHINHVHLKIPRPPREPRRQRRPGRKISAPAHEILGRDYEIIRATNDLTRGPDHEIIGPDYAITSIDHDMRGRNYEIRGTNHEMRSPDCEIRGPDYEIRGPDYEIRGTDHEIRGSNRTEMKRSNQEIRIPGNKIKGLSRKEMRGQDCDVGGTDHEIRGRAHEKRGPDQGHRPRARRRSPDQEIQGLLVKKSNSNNRNGGPDHQIQGLLVRSSNSNNKKGGLDHEIQGFLVKNLNSNNINRGPDHKIRASNHRGPNKDKGPQRVVRNSYNTSLRPQHDMREYDHVDTLGMYYCFNVLSLPDSLVDSLPDSLTDSLVDSLPDSLPDSLVDSLVVSLPDSLVDSLPDSLPDSLVDSLVDSLPVSLVDSLVDSLVGSLPDSLPDSLPDSLVDSLPDSLIDSLPDSLVDSLPNSLVDSLPDSLVDSLVDSLPDSLLDSLPDSLLDSLPDSLPDSLVDSLVESLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00934219;
- 90% Identity
- iTF_00934219;
- 80% Identity
- -