Basic Information

Insect: Lysandra coridon
Gene Symbol: -
Assembly: GCA_905220515.1
Location: HG992064.1:1625616-1639650[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.22 19 6.6 0.1 2 23 224 245 223 245 0.87

2 16 0.053 4.5 8.6 1.3 1 23 255 278 255 279 0.94

3 16 8.5 7.2e+02 1.6 0.7 2 21 412 431 412 432 0.91

4 16 0.0029 0.25 12.5 0.8 2 23 463 484 462 484 0.95

5 16 4.4 3.7e+02 2.5 0.6 1 23 496 520 496 520 0.87

6 16 2.5e-05 0.0021 19.1 0.4 2 23 527 550 526 550 0.97

7 16 0.055 4.6 8.5 0.5 1 23 556 578 556 578 0.94

8 16 0.0029 0.25 12.5 4.2 1 23 584 606 584 606 0.98

9 16 0.03 2.6 9.3 0.3 1 23 718 740 718 740 0.97

10 16 2.2 1.8e+02 3.5 6.2 1 23 747 769 747 769 0.95

11 16 0.0012 0.1 13.8 1.8 1 23 802 825 802 825 0.95

12 16 0.0042 0.35 12.0 0.8 1 23 832 855 832 855 0.97

13 16 0.13 11 7.4 0.2 2 23 875 897 874 897 0.95

14 16 0.051 4.3 8.6 0.1 2 23 916 938 915 938 0.95

15 16 6.2e-05 0.0052 17.8 0.6 1 23 961 983 961 983 0.98

16 16 0.0023 0.19 12.8 0.8 2 23 993 1015 992 1015 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.22	19	6.6	0.1	2	23	224	245	223	245	0.87
2	16	0.053	4.5	8.6	1.3	1	23	255	278	255	279	0.94
3	16	8.5	7.2e+02	1.6	0.7	2	21	412	431	412	432	0.91
4	16	0.0029	0.25	12.5	0.8	2	23	463	484	462	484	0.95
5	16	4.4	3.7e+02	2.5	0.6	1	23	496	520	496	520	0.87
6	16	2.5e-05	0.0021	19.1	0.4	2	23	527	550	526	550	0.97
7	16	0.055	4.6	8.5	0.5	1	23	556	578	556	578	0.94
8	16	0.0029	0.25	12.5	4.2	1	23	584	606	584	606	0.98
9	16	0.03	2.6	9.3	0.3	1	23	718	740	718	740	0.97
10	16	2.2	1.8e+02	3.5	6.2	1	23	747	769	747	769	0.95
11	16	0.0012	0.1	13.8	1.8	1	23	802	825	802	825	0.95
12	16	0.0042	0.35	12.0	0.8	1	23	832	855	832	855	0.97
13	16	0.13	11	7.4	0.2	2	23	875	897	874	897	0.95
14	16	0.051	4.3	8.6	0.1	2	23	916	938	915	938	0.95
15	16	6.2e-05	0.0052	17.8	0.6	1	23	961	983	961	983	0.98
16	16	0.0023	0.19	12.8	0.8	2	23	993	1015	992	1015	0.95

Sequence Information

Coding Sequence: ATGTCGGACGACATTCAACCACTCATTGTATGCATGGAAAACAATGATGGAGAAAAAGTTTCCCTAAGAATTAATCCTACCGATAGTTTTCAAACATTTTTAGATAATGCGAAGGCACTATTAGGCTACGATATTGATTTAGATTCAGTTACCAATAACCAACCAGTATCACTCGAGGACAATATTTATACTTTTCTGTTAAATATGGAAGATGATACACACAATAGAAAAGAAGATACGTTTAAGTGTTATGAACTAGAATACGTATTAGGCGATGGGACACAAATTGAAGCATCACAAATACAATTTGATAATGAAGATACAATAATAGATTTCAACGCTGTACAGATTCCATTTGTTAAATACGTGGAAGGATCCAGCGAAGATGAAATCAATTTTTCAGAAAAGATTACAACAGTAAACTACGTTATCCCTGAAAAGAATTCTAAAGTCCAACAGAAGATTAATAACGAAATAACATCAAGTTTCAAAGGAAATGCAAAAGAACCCGATGATGCTGTGATCGTTGATACCGATAATAAATTTTCTAATGATATTGAAATAATTGAACCAGACATTGACTATGACAATATTGATAAAATAGAGGACGAAGTTGTTATGGAGTTTTTAGGTAAAAATGAAAAGTGTGTTATGAAGGATAAGAAATTAATATGCAGATTTTGCGATAAAGCGTTTGAGAACATTTCTCAAGTGGCCGATCATGGAGATGAACACAAACATGAGTTAGATGACGGAACTCTTTATCCTTGTCCACTTTGTGACTATGGGTATGCTAAAAATAAGTGGCTCAAATGTCATATCAAAGCTGTTCATCATAAAGTTGAAGATAAGCCTCTTATTAAAGAAGAAGAAAATAAAGAGACTCTATCACGTGAACCATCGCCAGTGGCTAAAAGAACAAGAAGTTCAATTAAGAAAAGTGACCAAGAAATTGTTACAGGTTATAAATTAATATTAGATTTGATACTTACGTCTTATGAAGAATTTGTTAAAAAATGGTGCAATGAAAAAGCAACTCAAGAAGTAAAGTCTATTGATGAGGCTAAGTCTCCGCTGGTTTTGATAACGGAGGTGAAACAGGAGATCTTGGATAGCAGTGATGAGGAGGCGATATGGATTGTTCAGGCGGAAGCCGAGGCACAAGGAAACCAGAAGAAACAAGCATCTGATAAAGTTGACGTCAAAACTAGAGAAAAGTCCGACAAAGAGCCAAAGTGTAACAAGTGTTTACAAATACTCAGTTCGGCGGAGGCTGTAAAGGCTCACAAATGTAGAAAGCGAGAAAGAAAAAGAAATGCAAAGGTAGATTCCGTAAAGAAACCTCAAAAGAAGAAGGGCAAGAGTTCAACAGAGCCCCGAATAGTAACATGCGATATCTGTGATGAGTCATTTAGTTCCAAAGTGAGACTAAAATTTCACATGCAATTCCACGAGCCTAGCGCCAATATAAGTGCAGACGGGGAGTACCTATGCTCAGAATGTGACGGCGCGACGTTCCCGAGCGAGACGGAACTATTCGACCACGTACACTTTAAACACAAGAAGAAGAAACGTTGGCAGTGCCCAACGGAGGGCTGCGGAAAAACTTTCTTTATGCGGCCTACGCTGACGAAGCACCTTCGCACGCACACCGACACGCGCCGCTATGTGTGCGTCACGTGCGGCAAGCGGTTCCTCAACAAACAGACGCTAGACGAGCATAGTGTTACACATCTTCAGATCAAGCCTTTTTCGTGCCATATTTGCCTGAAGCAGCTGACGCGGCGGTCGCGGCTGCGCATGCACCTGCGCTCGCACGAGGAGGAACCTTCGCCGCGGCTCGTGCTCGCCTGCGCCGTCTGCCGCCGCGCCTTCGCCGCAGCCGCTGAAGCTACGGAGCACGTAACAATGTCGACTGAGTGCTTGGAACTTTTCGCGCTAGAAGTAAAGAAGGAGACCGAAACAGAAGAACTGTCTCCTACTACCGGCATCGTGACGCAGAATTCTGAGAATAATATCCGAAACTTTTCAGAGAGTTCTGTCAATGATCCAATAGAGCGTGAGGTGAACACAAGCGAGAGCACCGCGCTGCTTGAGGCAGTGGATGATGAGGCGAGGGCCATAGTGCGTGTTGTGAACATAGAGAAGGCGTTCCGATGCGAATACTGCGAGGATGTTTTCTACTTGGAAGAAGCTTTGAACAAGCACAGGACAATACATAAAGGAGTTAAAAATCCTTTTATCTGCCATATATGCAAAGTTAGTTTTGCGACGTACTCCAGATGTACTACCCACAAGACGACTCACGGGTTCTACAAGCGCAAGGAGAAGGATATTGCTACCAATAACGCCGGACCGAACGCCGGCATACTCGGCTACGGGGGATTCCCCGTGGCCAAACACTTTTTATGCGAGGACTGTGGGCGCTCGTACCTGCACTGGACGTACTTACAGGTACACCGGCGGATGAAACACGACAACCAAGATGTGCTGTTCCAGTGCAACGACTGCAAATCCACCTTCCCTAACAGTTGGAGTGTGGCGTACCATAGGAAAAAAGTTCACGGGAAAAGTGCGGGCGACGACGGAATAACTAAAATAAAGAAAGAAGACTATGGAATACCCTGTCGAGACTGCGACCAACTATTGGCGAATAAAAACGCACTTTATAAGCACAGGCTGAAGGAACATTCCGATCAATCACTTGGCGAAATCAATACGTTGTTATCAGAGGAGAAGTGTATGACTTGCGGGAAGTGTGGCCTCCAAGTACAAAAGTTAGGAGATTTGGAAAAACATCTCAGGGAGGTTCATGATGAAGAGCAACTAATGTTCTCGTATGACGCACACGCGAGCACGCAAGGTGCGGGCGAGCGCCGCTACCGATGCGAATTTTGTGGCGTGTCCTTCAATAGGGCGGCAACAATGCGCAACCACCGTCAGATCCACAGCGGTTTGATCCGTTATATGAAGTGGTCCTGCGAGCGCTGCCCGCACCGCTTCAGCGCGCGCGCCGAGCTGCGTGCGCACTTGCGTCTCAAGCACCCCGAGCGCCTCGCCGCGGCCGTCATTGAGATCGAAGGGCTAAATCCATCACCAGAGGTAGTGCTGAACTATCTGAAAATGAAAAACATTCAACAACGAAATGTTATCGATATAACCATGATTTCATTTGCTCAGGGAACCACAAATATTGTACCCAATTCTGCCAGAGCCTTGTCCTTATTGAATGACGTGCCGCGAACACACATAGCTCGAGAGGATTCTACGTTTCCTCGCGGACACGGTATCATGCAGGCACTGCGTCCCGACACCAGCAGCACTAGCAATAACTGGCCAAGTATTATCCATCCAAACACAGGAACAGTGCAAGACTATTTCTCTATACCTACAAATGATTTTGTGATCTTCCGACCGTACGAGGTGGTATGCCCGGTCAGGCCGAAGCCTCACGTGGGCTGCCTCATTTCAGCTGTCGTATATATACCGACGCGCTTAGAAAACTTCGATAGCGCGATGCAGGAATGTTAG
Protein Sequence: MSDDIQPLIVCMENNDGEKVSLRINPTDSFQTFLDNAKALLGYDIDLDSVTNNQPVSLEDNIYTFLLNMEDDTHNRKEDTFKCYELEYVLGDGTQIEASQIQFDNEDTIIDFNAVQIPFVKYVEGSSEDEINFSEKITTVNYVIPEKNSKVQQKINNEITSSFKGNAKEPDDAVIVDTDNKFSNDIEIIEPDIDYDNIDKIEDEVVMEFLGKNEKCVMKDKKLICRFCDKAFENISQVADHGDEHKHELDDGTLYPCPLCDYGYAKNKWLKCHIKAVHHKVEDKPLIKEEENKETLSREPSPVAKRTRSSIKKSDQEIVTGYKLILDLILTSYEEFVKKWCNEKATQEVKSIDEAKSPLVLITEVKQEILDSSDEEAIWIVQAEAEAQGNQKKQASDKVDVKTREKSDKEPKCNKCLQILSSAEAVKAHKCRKRERKRNAKVDSVKKPQKKKGKSSTEPRIVTCDICDESFSSKVRLKFHMQFHEPSANISADGEYLCSECDGATFPSETELFDHVHFKHKKKKRWQCPTEGCGKTFFMRPTLTKHLRTHTDTRRYVCVTCGKRFLNKQTLDEHSVTHLQIKPFSCHICLKQLTRRSRLRMHLRSHEEEPSPRLVLACAVCRRAFAAAAEATEHVTMSTECLELFALEVKKETETEELSPTTGIVTQNSENNIRNFSESSVNDPIEREVNTSESTALLEAVDDEARAIVRVVNIEKAFRCEYCEDVFYLEEALNKHRTIHKGVKNPFICHICKVSFATYSRCTTHKTTHGFYKRKEKDIATNNAGPNAGILGYGGFPVAKHFLCEDCGRSYLHWTYLQVHRRMKHDNQDVLFQCNDCKSTFPNSWSVAYHRKKVHGKSAGDDGITKIKKEDYGIPCRDCDQLLANKNALYKHRLKEHSDQSLGEINTLLSEEKCMTCGKCGLQVQKLGDLEKHLREVHDEEQLMFSYDAHASTQGAGERRYRCEFCGVSFNRAATMRNHRQIHSGLIRYMKWSCERCPHRFSARAELRAHLRLKHPERLAAAVIEIEGLNPSPEVVLNYLKMKNIQQRNVIDITMISFAQGTTNIVPNSARALSLLNDVPRTHIAREDSTFPRGHGIMQALRPDTSSTSNNWPSIIHPNTGTVQDYFSIPTNDFVIFRPYEVVCPVRPKPHVGCLISAVVYIPTRLENFDSAMQEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -