Basic Information

Insect: Lysandra coridon
Gene Symbol: -
Assembly: GCA_905220515.1
Location: HG992115.1:1562373-1573840[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.6 3e+02 2.8 0.3 1 23 84 107 84 107 0.92

2 19 4.6 3.9e+02 2.5 0.1 3 23 112 132 110 132 0.94

3 19 0.31 26 6.1 0.0 3 23 137 158 135 158 0.90

4 19 0.52 44 5.4 0.3 3 23 382 403 380 403 0.95

5 19 0.0073 0.62 11.3 0.2 1 20 411 430 411 432 0.95

6 19 0.041 3.5 8.9 0.7 2 23 442 463 441 463 0.93

7 19 0.95 80 4.6 0.6 1 23 479 502 479 506 0.86

8 19 0.16 13 7.1 1.7 1 21 511 531 511 534 0.84

9 19 2.7 2.3e+02 3.2 0.5 8 23 584 600 580 600 0.90

10 19 0.81 69 4.8 0.2 2 19 612 629 611 634 0.79

11 19 3.4e-05 0.0028 18.6 1.2 1 23 668 690 668 690 0.97

12 19 1.4e-06 0.00012 23.0 0.9 1 23 697 719 697 719 0.99

13 19 8.6e-05 0.0073 17.3 2.3 1 23 724 746 724 746 0.96

14 19 0.00041 0.035 15.2 1.5 1 23 752 774 752 774 0.98

15 19 3.9e-05 0.0033 18.4 1.2 1 23 780 802 780 802 0.93

16 19 0.00066 0.056 14.5 2.5 2 23 809 830 809 830 0.97

17 19 0.00036 0.031 15.4 0.8 2 23 838 860 837 860 0.97

18 19 0.0004 0.034 15.2 3.8 1 23 865 887 865 887 0.98

19 19 0.0018 0.15 13.2 3.0 1 23 893 916 893 916 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.6	3e+02	2.8	0.3	1	23	84	107	84	107	0.92
2	19	4.6	3.9e+02	2.5	0.1	3	23	112	132	110	132	0.94
3	19	0.31	26	6.1	0.0	3	23	137	158	135	158	0.90
4	19	0.52	44	5.4	0.3	3	23	382	403	380	403	0.95
5	19	0.0073	0.62	11.3	0.2	1	20	411	430	411	432	0.95
6	19	0.041	3.5	8.9	0.7	2	23	442	463	441	463	0.93
7	19	0.95	80	4.6	0.6	1	23	479	502	479	506	0.86
8	19	0.16	13	7.1	1.7	1	21	511	531	511	534	0.84
9	19	2.7	2.3e+02	3.2	0.5	8	23	584	600	580	600	0.90
10	19	0.81	69	4.8	0.2	2	19	612	629	611	634	0.79
11	19	3.4e-05	0.0028	18.6	1.2	1	23	668	690	668	690	0.97
12	19	1.4e-06	0.00012	23.0	0.9	1	23	697	719	697	719	0.99
13	19	8.6e-05	0.0073	17.3	2.3	1	23	724	746	724	746	0.96
14	19	0.00041	0.035	15.2	1.5	1	23	752	774	752	774	0.98
15	19	3.9e-05	0.0033	18.4	1.2	1	23	780	802	780	802	0.93
16	19	0.00066	0.056	14.5	2.5	2	23	809	830	809	830	0.97
17	19	0.00036	0.031	15.4	0.8	2	23	838	860	837	860	0.97
18	19	0.0004	0.034	15.2	3.8	1	23	865	887	865	887	0.98
19	19	0.0018	0.15	13.2	3.0	1	23	893	916	893	916	0.98

Sequence Information

Coding Sequence: ATGTCATCCGCAGAATCGGACGATGAACCGCTCTCGGTTTTGGCCGCAGCTAAAAAAGCAAACCCCCAGCCAGAGGAAGAAAATACACATTCCACACATTCAAAGAAAAGAAAAAAGACAGTAGTTGCAAAAAAGTCGAGCATTTCTCTAAAAATCAATAAAAAACTACAAGAAATACTGTCGCCTCCCGTCACCCAACGACCAGCTGATGTGTGGTTGTACTTGAAAGATCTGAATGCAACGGGACCGTACACATGCTTGTTATGCTCAGCGTGGTTTATAAACAAATCAAAAATGATCATGCACTATGCTTTGAATCACAAGAAGGACTTCTGTGGTATATGCAGATACTTTGTACCAGACAGGGAGGCTTGGTTTGCACATGAAAAGTTTCACACTCCGTGGCCATGCTCACAATGCATTGACTCCTTTGCTACTGAACCCCTTTTGAGGGTCCACCTCCGTACAGCCCACAATTTAGTCCACTGCCAACTATGCCACTTCCGAGTTCCGGCAGACGAAGAATATGAATCACATCTATACCAAAAACACAATGTCACTAATCCAGTTGTCAAAGAAGTGGAAAGCTTATGGGAAATTGACTATGAAATACAGAAATATGTTTGTGTTTTATGTTCAAAAGGAGATAACCTATTCTCTACGTTCTTTTCCCATTTCATGGGCTACCATCATTTCACCTTGAAATGTTTGACTGGTATTGTGGCCGGCAAGGACCCACCATTTTTAGTTGATGGTGCGGATGTCAGTGATCAGTTTATTGAGGATCAATTGAAAGGTCTGACACGTCTTGGCTATGTTGATTTGGAGCAGCAGAAAACGCCTATTTCGAGAGCGAATACTGAGTTTCAGGATTCTGAAATTCCTGAAAATCTTCAGCCCGAGGTAAAACTAGAAGCTTTTAGTGATGAGGAAATAAAAACTGAAAATGCTGATACCACAGGAGATTCAGATCTGAACATTGATTATGAAGGTGTACAAGATTTTGATGTAACTCTAACAGAAGTGATAGTTTTAGAAAACAGCTACTTCAACTATTTAGAAAGTACACAAAGGGCTCTCAATTTAAACACAGTGCCGGAAAAATCAGATATCATGTATGAACATATGAAACCAGAATTATTCTGCTCTCTATGTGACTCAAAATTTCAAACTGAACCAGCATTTTTGGTACATATTTCCAAAATGCATAACGTAAGAGTAGTGCCTTTGTATTCATGCCGAGTTTGTGCAACCACATTTGACACACAGACGGAACTTAAATCACATGTTACAGAGGAAATGGGTGACTTTGAGGATCTATGGATATGTCAATTCTGTGACAAAGAATTTGATAATAGAGAGTCCTCTAGAAGACATTTGACAGAACACTGGCACAGCTTGGAGTTTGACAACTGTTTCAGTCCGCACCTAGGATTCAAATGCAAATACTGTCCTACATTATTTTGGAATGAACCGGAACGAGAAGCACATCAAATAAGGGCACATATCAACAAACATAAGGACGACTTTTATAAATGCCAGAAATGTTCTTTAATGTTTAGTGATAAGGTTTGGTTTATGTTTCATTATTTAGAAAAGCATAAAAGTGATGAAACTAAACATTCCTATCTATTCAAATGTTGTGTATGCTGCATAGTTCTGCAGAGTCTACAGGATACGAGATCACACTTTAAGGAACATCATCCGCAAGCGAAGAAAACTTATTGCTCTCTAGATCCATGTAAATTCAAACCTCTGACACACAGGAAATCATTAAAAGTACATGTGAAGACTATCCATGGCTCCCCTAAAAGTCCGAAGCGTGAGTGCGTATCGTGCGCTGAGTGCGGGCGCGGGTTCGCCACGGCGCGTGCGTGCAGCGCCCACGCGACGCAAGTTCATGGCCAGGGGAAATTCAAGTGCAAACTGTGTAGAGATGTGCTGCATACTTTGGATGAGAGAAAACTCCACTACCTCCTTCGCCATCCCGGCCGCCATCCGTTCGAGTGCGGTGACTGTGGCAAGTCATTCCAATATAAGTCATCGCTATACATGCACAAACAGGAACACGCGCCCAATAAACAGGACTACAAGTGTGAATACTGCGGGAAGATTTTTGCGAAGAAGGATTCCTTCCGCGAGCACCTCCAAATCCACTCTGGTCCGCGGCACGCGTGCTCCTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGTCGTCATACAGGCGAGCGGCCGTACGCGTGCCCGCACTGCCCGCGCACATTCGCCGATAAGGGCGCCTGTACCGCGCACTCCAGAACCCATTCGAAAGCTACATCGTTCGCGTGTATTTACTGTGGCCAGACATTCGTTCAGAAGTCCAAGCTTACTTACCATATTCGAAAACATACTGGGGAGAATTTGGAGTCATGTACAGTGTGTTCCAAACTATTTACCAGCGCGTGTTCTCTACGCGAGCACATGAAGATACATGTTGAGAACAAACAGATTGTCAAGTGTCCACTTTGTGACAAGAAATACCAAGACGAGCGTTACATGCTTCGACATCTACGGACTTCGCACACCGGTTCCACATTCACGTGTCCCGTCTGTCGCAAGTGCCTTACTAGTTCCACTGGGCTACGTCATCACGTCCTCACTCATAGCCGCCTCAACACTTTCCGGTGTAAGATGTGCACCAAATCATATGCAGCAAAGAAGTCGATGATAAAGCATCTCAAAAAGCGACACAATTTGGACATATCATTGATTAACACCAAAGAATATTTCTTCCGCTTGGACCCAAGGGACTGCAAACTGGGCCTAGACGAGGAAACAATGAACATGATATTTGGACCCAAAAAGTTTGTCAATGATGTTTTGATCAGTGATTATGTGACTTTAGCTAATAATGTTAATGTGAATGAAGATAAGAAAGAAAGCAGCGATGAACAAGCTAAAGAGAGTGATAAAAGTGATAGCGGTATGGAGTTCGACGCAGTTAATATTAAACAAGAAGTGCATAGTGAGGAGAATTCGTTAGAACCGACAGATTTTGTGAGTGTCAAAATTGAAAATTTAGATGAGAGTTTCAATGAAGAAACCACATAG
Protein Sequence: MSSAESDDEPLSVLAAAKKANPQPEEENTHSTHSKKRKKTVVAKKSSISLKINKKLQEILSPPVTQRPADVWLYLKDLNATGPYTCLLCSAWFINKSKMIMHYALNHKKDFCGICRYFVPDREAWFAHEKFHTPWPCSQCIDSFATEPLLRVHLRTAHNLVHCQLCHFRVPADEEYESHLYQKHNVTNPVVKEVESLWEIDYEIQKYVCVLCSKGDNLFSTFFSHFMGYHHFTLKCLTGIVAGKDPPFLVDGADVSDQFIEDQLKGLTRLGYVDLEQQKTPISRANTEFQDSEIPENLQPEVKLEAFSDEEIKTENADTTGDSDLNIDYEGVQDFDVTLTEVIVLENSYFNYLESTQRALNLNTVPEKSDIMYEHMKPELFCSLCDSKFQTEPAFLVHISKMHNVRVVPLYSCRVCATTFDTQTELKSHVTEEMGDFEDLWICQFCDKEFDNRESSRRHLTEHWHSLEFDNCFSPHLGFKCKYCPTLFWNEPEREAHQIRAHINKHKDDFYKCQKCSLMFSDKVWFMFHYLEKHKSDETKHSYLFKCCVCCIVLQSLQDTRSHFKEHHPQAKKTYCSLDPCKFKPLTHRKSLKVHVKTIHGSPKSPKRECVSCAECGRGFATARACSAHATQVHGQGKFKCKLCRDVLHTLDERKLHYLLRHPGRHPFECGDCGKSFQYKSSLYMHKQEHAPNKQDYKCEYCGKIFAKKDSFREHLQIHSGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTAHSRTHSKATSFACIYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKIHVENKQIVKCPLCDKKYQDERYMLRHLRTSHTGSTFTCPVCRKCLTSSTGLRHHVLTHSRLNTFRCKMCTKSYAAKKSMIKHLKKRHNLDISLINTKEYFFRLDPRDCKLGLDEETMNMIFGPKKFVNDVLISDYVTLANNVNVNEDKKESSDEQAKESDKSDSGMEFDAVNIKQEVHSEENSLEPTDFVSVKIENLDESFNEETT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289138;
90% Identity: iTF_01217752;
80% Identity: -