Lcor004293.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992070.1:767121-768609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.045 3.8 8.8 0.7 1 23 151 174 151 174 0.92 2 10 8.9e-05 0.0075 17.3 0.2 2 23 178 200 177 200 0.90 3 10 1.2 1e+02 4.3 6.1 1 23 202 225 202 225 0.95 4 10 0.016 1.4 10.2 2.4 3 23 230 250 229 250 0.98 5 10 6.6e-05 0.0056 17.7 0.3 2 20 255 273 254 275 0.93 6 10 4.9e-06 0.00041 21.3 0.2 1 23 294 317 294 317 0.96 7 10 7.5e-07 6.3e-05 23.8 0.6 1 23 323 345 323 345 0.97 8 10 0.00024 0.021 15.9 1.5 1 23 351 373 351 373 0.99 9 10 0.00095 0.08 14.1 0.4 1 23 379 402 379 402 0.95 10 10 0.00021 0.018 16.1 2.2 2 23 408 429 407 430 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAAAGTAATTTAGTAAATCTTGTGAATTGTTTTATTCGAAATAAAAAATATACCAATTGTAGGTTATGCCTCGGTATTATTCTTGACGAATACGTTCGTTTGGATCAAAATATTTCTATCGACGGTGCAGAGCAACCACTGTCGAAAGTGTTGGAACAAATAGTCGGAGAAGTAGTTGAAGAAGTGCCTGGTCTTGAAGCTATGTGCACCGACTGCACTGAAGTCGCTCTGCAGTCTATACGTTTAATTAATATTTGTAAGAAATCCAACAAAGCAATTAACACTCTCTATGAAAATATATCCAAATGTTTAGATGTTGATACTGACTTAATTGATAAGAACAAAATGTTGCATCTCATACTTAATGGAGAACAATCGAGAGCCATTATAGAGGACAATGAGGAAAATGAACTGAATAAAATGCCTAATAATTCAGAAAAATATTTCGAATGCACGGACTGTGATAAAATCCTCCACACGATATATGACGTTCAACAGCACAATTTGTCAGAGCATAGTGTTTGGACTTGCAGTATGTGCAGTAAAATGTTTAGCAGCAAGGAGGAATTGATTAATCATGAAGATAACGCCCACAAACACCAATGCCCACATTGTTCCGCTAATAAATGTTCCGAAGATAGCCTGCAAAAGCATCAAGACAAATACCATACTGAAATGTTATGCACTGACTGCGGTAAGACATGCCAAGGGATGGTCAAGCTGAAGAGTCACCAAGAGAAACATAAAACGAAAAGCACCTGTCCAAAATGTGGTAAAAGTTACACCACGAAAGATTTCTATTTACGACATGTTGAACTTTGCATAAAAGATATGATCGATCCCCATCCGATACGGAGTACCATGCAGAAATCTTTTGTATGTGAAAAATGTGACAAAGCATACAGTACTCCCGGTGGTCTGAGAGTGCATTACCGCTTCGTACATAACAGGGCTAAGCCACATGTCTGCAAAGAGTGTGGAAAGGAGTTCACCGCACCCAGCTATCTCAAAATCCACATGGTGACGCATACAGGGGAAAGAAATTTTAAATGTGATATTTGTAGCAACAAGTTTGTATCAAAAGAAGCGCTCTTGTATCATAAGAGGCGACACACAGGTGAAAAACCATACAGCTGTAAGTTATGTGACGAGAAATTTGTGAACGCTTCAGCGAGAGCGGAGCACATAAAGTTTAAGCATGTTGGCCCGACTCTCATGTGCGAGGTTTGCTCTCGCAAGTTTGTTACTGCTAACTTTTTAAGACAGCACATGAGTAGACACCACGACCCGACAAGTAAATGGTATAGCAAGCACAATGATTCAAAACAACCAGATGAACAAAGTACGAGGAATTTCGTAATTAACGAAACATGA
- Protein Sequence
- MSQSNLVNLVNCFIRNKKYTNCRLCLGIILDEYVRLDQNISIDGAEQPLSKVLEQIVGEVVEEVPGLEAMCTDCTEVALQSIRLINICKKSNKAINTLYENISKCLDVDTDLIDKNKMLHLILNGEQSRAIIEDNEENELNKMPNNSEKYFECTDCDKILHTIYDVQQHNLSEHSVWTCSMCSKMFSSKEELINHEDNAHKHQCPHCSANKCSEDSLQKHQDKYHTEMLCTDCGKTCQGMVKLKSHQEKHKTKSTCPKCGKSYTTKDFYLRHVELCIKDMIDPHPIRSTMQKSFVCEKCDKAYSTPGGLRVHYRFVHNRAKPHVCKECGKEFTAPSYLKIHMVTHTGERNFKCDICSNKFVSKEALLYHKRRHTGEKPYSCKLCDEKFVNASARAEHIKFKHVGPTLMCEVCSRKFVTANFLRQHMSRHHDPTSKWYSKHNDSKQPDEQSTRNFVINET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406121;
- 90% Identity
- iTF_00934093;
- 80% Identity
- -