Lcor027244.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992057.1:7866134-7890199[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.1 1.7e+02 3.6 6.2 1 23 36 59 36 59 0.95 2 16 0.025 2.2 9.6 0.2 1 23 63 85 63 85 0.97 3 16 5.3e-06 0.00045 21.1 1.1 1 23 91 114 91 114 0.97 4 16 0.01 0.87 10.8 0.6 1 23 118 141 118 141 0.96 5 16 0.048 4.1 8.7 0.1 2 20 153 171 153 173 0.93 6 16 0.048 4.1 8.7 0.1 2 20 182 200 182 202 0.93 7 16 0.048 4.1 8.7 0.1 2 20 211 229 211 231 0.93 8 16 0.048 4.1 8.7 0.1 2 20 240 258 240 260 0.93 9 16 0.048 4.1 8.7 0.1 2 20 269 287 269 289 0.93 10 16 0.048 4.1 8.7 0.1 2 20 298 316 298 318 0.93 11 16 0.048 4.1 8.7 0.1 2 20 369 387 369 389 0.93 12 16 1.6 1.4e+02 3.9 0.0 2 23 429 451 428 451 0.90 13 16 1.1 95 4.4 3.5 1 20 463 482 463 485 0.83 14 16 2.5e-05 0.0021 19.0 2.1 1 23 491 513 491 513 0.97 15 16 0.00016 0.014 16.5 1.3 1 23 520 543 520 543 0.98 16 16 0.0004 0.034 15.2 0.5 1 23 549 572 549 573 0.94
Sequence Information
- Coding Sequence
- ATGGTGCGTATACTATTTTTCTCATCGACGGAGGCGGAAAACGGCAACATCGGTAAGCGCAGTGGGAAGAAAGTTGACGTTTTCCGCCCGGAGACATTCGGGCCGTACAGTTGCGCGTTGTGCAAGCACCGGTTCCGGCGGGAGTTCCGACTGCGCTGCCACATAAGAGCGAGGCACGCCAGCAAGTACACATGCAGGGATTGCGGCATGGTCACACAAGACAGGAAGGCAGCTGTTACTCACCAGAAGGAGCACAATGGCACCAACATCTTTGAGTGCCCGCACTGCCCCGTCACATTCCGCAAGCAGACGTCGTTGTGGTGGCACCTGCGGCTCAAGCACTCGTCGCGGTTCGCGTGCGAGCTATGCGGCTACACGTTCCTCAACCAGCGTGGCGTCAATACTCACAAGCGCATGAGCCACATCCTGGACGCCCAGGTGAAATTAGAAGGACCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACAGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACAGCAACCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACAGTAACCCGAACCGCGTCCGCAGTGAGTTACATGCTACGTATAAGGTGCAGCCGCGGAACACGATAAAGCAGCGGCTTGCGGCCGGCAAACCGATACCTTGCGAGGAGTGCGGCGAGCAGCAGGCCAGCTACAGAGAGTACGCGCGACACTTCCGCGCGGCGCACCCCGGCCTCGTCCGCACCAAGATCAGAGCCAACTACATGTGCGACCAGTGCGGCAGGAGGTTTCATTGCGCGGCGGTGCTCCGGGACCACATGGCGTGCCACGAGGGCGTGAGTCGGCACCGGTGCGACGTCTGCGACAAGGCGTTCAGCAGTAAGTACCTGCTGGGGACGCACCGACTGAAGCACGGATCGAAGCCGCCCACGTACCCCTGCCCGCACTGCGAGCGCACCTATACGGCCTACTCGAACCGCGAACGTCACGTGAAGACGGTGCACGAGCGCTCGATGCGATTCGAGTGTGAGATCTGTGGCAAGGAAGTCACGTCGATGGCGAGCTTGCGCGATCACATCGACCACGTGCATCACAAGAAGCCGTGGCCCAAGCGAGTGCGCGCGCCCCGCTCGCGCTCGCGACCGTCCACCGACAGCGAGTAA
- Protein Sequence
- MVRILFFSSTEAENGNIGKRSGKKVDVFRPETFGPYSCALCKHRFRREFRLRCHIRARHASKYTCRDCGMVTQDRKAAVTHQKEHNGTNIFECPHCPVTFRKQTSLWWHLRLKHSSRFACELCGYTFLNQRGVNTHKRMSHILDAQVKLEGPYCEECKLRFASDEAYQRHLTQSSVKLEGPYCEECKLRFASDEAYQRHLTQSSVKLEGPYCEECKLRFASDEAYQRHLTQSSVKLEGPYCEECKLRFASDEAYQRHLTQSSVKLEGPYCEECKLRFASDEAYQRHLTQSSVKLEGPYCEECKLRFASDEAYQRHLTQSSVHSSDSETRRSVLRGVQAAVRQRRGLSAPSHAVLRTQQRQQPVKLEGPYCEECKLRFASDEAYQRHLTQSSVHSSDSNPNRVRSELHATYKVQPRNTIKQRLAAGKPIPCEECGEQQASYREYARHFRAAHPGLVRTKIRANYMCDQCGRRFHCAAVLRDHMACHEGVSRHRCDVCDKAFSSKYLLGTHRLKHGSKPPTYPCPHCERTYTAYSNRERHVKTVHERSMRFECEICGKEVTSMASLRDHIDHVHHKKPWPKRVRAPRSRSRPSTDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -