Basic Information

Insect: Lysandra coridon
Gene Symbol: -
Assembly: GCA_905220515.1
Location: HG992068.1:2276652-2279156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0081 0.69 11.1 2.8 5 23 370 388 369 388 0.97

2 11 0.00024 0.021 15.9 0.2 2 23 397 418 396 418 0.94

3 11 1.3 1.1e+02 4.2 1.2 2 23 426 447 425 447 0.85

4 11 9e-07 7.6e-05 23.6 0.8 2 23 452 473 452 473 0.98

5 11 4.6e-05 0.0039 18.2 1.3 1 23 479 501 479 501 0.98

6 11 0.049 4.1 8.7 0.4 2 19 506 523 505 525 0.93

7 11 0.0066 0.56 11.4 0.1 1 23 561 584 561 584 0.94

8 11 0.00031 0.026 15.6 0.1 1 23 605 627 605 627 0.98

9 11 7.4e-05 0.0063 17.5 4.5 1 23 633 655 633 655 0.98

10 11 0.0028 0.23 12.6 0.3 3 23 663 683 661 683 0.98

11 11 9.7e-05 0.0082 17.2 2.6 1 23 689 712 689 712 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0081	0.69	11.1	2.8	5	23	370	388	369	388	0.97
2	11	0.00024	0.021	15.9	0.2	2	23	397	418	396	418	0.94
3	11	1.3	1.1e+02	4.2	1.2	2	23	426	447	425	447	0.85
4	11	9e-07	7.6e-05	23.6	0.8	2	23	452	473	452	473	0.98
5	11	4.6e-05	0.0039	18.2	1.3	1	23	479	501	479	501	0.98
6	11	0.049	4.1	8.7	0.4	2	19	506	523	505	525	0.93
7	11	0.0066	0.56	11.4	0.1	1	23	561	584	561	584	0.94
8	11	0.00031	0.026	15.6	0.1	1	23	605	627	605	627	0.98
9	11	7.4e-05	0.0063	17.5	4.5	1	23	633	655	633	655	0.98
10	11	0.0028	0.23	12.6	0.3	3	23	663	683	661	683	0.98
11	11	9.7e-05	0.0082	17.2	2.6	1	23	689	712	689	712	0.96

Sequence Information

Coding Sequence: ATGGAATCTTGGTCAAATTTATGTCGGTGCTGTTTATCTCCAAATTCAGAAGTGTCACTTTTAAATAACGAAGATAATATTAGAGAAAAATTTTTAGAAGTCACGACCATTGAGGTTAGTGAGGACGACGGTCTTCCCCAGAAGCTGTGTGTAGAATGCTTTTCCACCATGACTTCAGCTTATCAATTTCGTACTCAGTGCCTAAAGATGGATAAAGAGCTGAAGGTTCAATTAAATATTATAACAAACCAGAATAAGGAACCAAACTCACCACAATTTTCTCAAATCGAAACCCAAGTCAGAGGCAGTGCAGACATGACCGTCGAGGATATTGCCAAAGAATCCATGAAACAAATTGAGAAAATCATCAAAACCGAACCCTGTGATGATGACGATACATACTATGTACTCGTGATTGATGACCCTAAAGATAGTGCATTGCAGTGTACAGTGAAAAAAGAAAATGTTGAAAGTAAACTGGTGCCTGAAATTATGAAAAATGTGAAAAAAGAGAAAGATATATTTAATTATGATAGTGAGACAAATTTACTACAATCCACCAATCAATTTGAAAACTGTGTAGATTCATTCTTAATGGCTAACTCGATTCCAAACAAAGTGCCAGCTACTATACTAGAAAATGAAGAACAAGACTCCGAACAGAATTATGAAATGGATGTAGATACAACCCAAGAGCAGACAGAAGAACAGGAGCTTTCCTTTGTTCAAGGAGATGGATTAACTATACTAGAAAATCCACCAAACACAACAAATGAGGACTCCCGGGAGGCTCTCAATGATTTCTCTATAGCCCTTGCAGGAAAACATTTGGATAGGTCTAAAAATATTATTAAAATATTATCACCTTCGGGAGGCGAACAAGCAATATTTTTGAAGAATGGTGAAAATATCAAATATTTAACTGATTCACAACTAGTCGATGCAGGCGATGATGTGTCGCAAGATCAACAAGTAATACTCTGTGAAGGCGAGGAGGGCTCCCAGTTCCAAATATTAAAATGTGATGGCTCAGAGTTAGTAATCGAGTATAGCGATGACAGTCAAATTGCTACGGTTCTTCAACAGGAGGATGGTACGTTTCTGTGTGATTGTGGAGAGCAATTCGAAGATCTGAGTCATTATGAGAAACACCAACATACACATCAATATACTTCTACCGCTCATCTCACCTGTCACTTATGTGGGAAGTCATTTGAGACTTCCGAAGTTCTGGCTGGCCATATGGTCTTACATAGTGTGAATACTCTTCTTGTAAAGTGCCTCTTCTGCAATCAATTTGTCAAGCGTAATAGCTTGACACAACATATAAAGTATGTTCATAACAGCAAACCAAAGTGCAATGTATGCTGGAAAACTTTTGCCAACCTGAACAACTTGAAACGTCACATGTTGATCCATAAAGGTGTTAAGGATTTTGAATGTGATATTTGTAACAAGAAATTTGCCCAAAAAATCACAATGCAAACTCACAAGTTAACACATGTGAATCCACTGGTGTGCACCCAATGCGGTTGTCTGTTTGAAGATCAGGAAAGTCTAGCCACACACAAGGATGGCCTTTGTAAGAAAACAATGACCGAGAAGGTCGATCAGATTAAAGAGGATTTAATGAAGACTGTCAAACAGGAGGTGACTACGAATAGTGGTAAATTACTAGGCTATGCATGTTCTATATGCAAGAAGATGTATTCCCTAGAATCTGCAATAGAGCAACATATTGAAAATGTGCACATAGAAAAACTGGATGTGGCTTTTGAGGATCAAAGTCAGGGCAAAAAGACAATTAAAAGATTTCCGTGCGGGACCTGTGGTAAAGGCTGTGCCAGTCAGGCCATGTTGATAATGCACGAACGAGTACACACCAATGAGAGACCATTCCCTTGTCAGCTGTGCTCATTGAGGTTCAAGACCAAGACTCATTTACGTACTCATCAGCTTACACATACTCGGGAGAAGAAATTTGGTTGCTCCGTTTGTATGAAATTCTTTGCCCTAAAAGGCAATCTTGTGGTTCATCTAAGAACACACACTGGGGAGAGGCCCTATCCGTGCCATTTATGCAATGAAGCTTTTATAGACTCGAAATATCTCAAAAAACATAAGCTAAGAAAACATGCTATTGAGAATGTCCCGTGGAACCAATATACCATAGATTCTAATGAATAA
Protein Sequence: MESWSNLCRCCLSPNSEVSLLNNEDNIREKFLEVTTIEVSEDDGLPQKLCVECFSTMTSAYQFRTQCLKMDKELKVQLNIITNQNKEPNSPQFSQIETQVRGSADMTVEDIAKESMKQIEKIIKTEPCDDDDTYYVLVIDDPKDSALQCTVKKENVESKLVPEIMKNVKKEKDIFNYDSETNLLQSTNQFENCVDSFLMANSIPNKVPATILENEEQDSEQNYEMDVDTTQEQTEEQELSFVQGDGLTILENPPNTTNEDSREALNDFSIALAGKHLDRSKNIIKILSPSGGEQAIFLKNGENIKYLTDSQLVDAGDDVSQDQQVILCEGEEGSQFQILKCDGSELVIEYSDDSQIATVLQQEDGTFLCDCGEQFEDLSHYEKHQHTHQYTSTAHLTCHLCGKSFETSEVLAGHMVLHSVNTLLVKCLFCNQFVKRNSLTQHIKYVHNSKPKCNVCWKTFANLNNLKRHMLIHKGVKDFECDICNKKFAQKITMQTHKLTHVNPLVCTQCGCLFEDQESLATHKDGLCKKTMTEKVDQIKEDLMKTVKQEVTTNSGKLLGYACSICKKMYSLESAIEQHIENVHIEKLDVAFEDQSQGKKTIKRFPCGTCGKGCASQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYPCHLCNEAFIDSKYLKKHKLRKHAIENVPWNQYTIDSNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01217726;
90% Identity: iTF_01217726;
80% Identity: -