Basic Information

Insect: Lysandra coridon
Gene Symbol: -
Assembly: GCA_905220515.1
Location: HG992076.1:2293968-2302892[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.8 8.3e+02 1.4 0.8 2 11 3 12 2 15 0.81

2 12 3.9e-06 0.00033 21.6 1.3 3 23 319 339 318 339 0.99

3 12 6.9e-05 0.0058 17.6 6.2 3 23 347 367 345 367 0.98

4 12 0.21 17 6.7 4.3 3 23 375 395 373 395 0.97

5 12 1e-06 8.9e-05 23.4 1.7 2 23 416 437 416 437 0.97

6 12 0.0002 0.017 16.2 0.6 1 23 443 465 443 465 0.98

7 12 8.7e-05 0.0073 17.3 0.8 1 23 471 493 471 493 0.95

8 12 3.4e-05 0.0029 18.6 3.3 2 23 500 521 499 521 0.96

9 12 4.9e-05 0.0042 18.1 1.3 1 23 533 555 533 555 0.98

10 12 0.00088 0.075 14.2 4.4 1 23 561 583 561 583 0.98

11 12 6.9e-06 0.00059 20.8 1.5 1 23 589 611 589 611 0.98

12 12 0.00058 0.049 14.7 4.4 1 23 617 639 617 639 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.8	8.3e+02	1.4	0.8	2	11	3	12	2	15	0.81
2	12	3.9e-06	0.00033	21.6	1.3	3	23	319	339	318	339	0.99
3	12	6.9e-05	0.0058	17.6	6.2	3	23	347	367	345	367	0.98
4	12	0.21	17	6.7	4.3	3	23	375	395	373	395	0.97
5	12	1e-06	8.9e-05	23.4	1.7	2	23	416	437	416	437	0.97
6	12	0.0002	0.017	16.2	0.6	1	23	443	465	443	465	0.98
7	12	8.7e-05	0.0073	17.3	0.8	1	23	471	493	471	493	0.95
8	12	3.4e-05	0.0029	18.6	3.3	2	23	500	521	499	521	0.96
9	12	4.9e-05	0.0042	18.1	1.3	1	23	533	555	533	555	0.98
10	12	0.00088	0.075	14.2	4.4	1	23	561	583	561	583	0.98
11	12	6.9e-06	0.00059	20.8	1.5	1	23	589	611	589	611	0.98
12	12	0.00058	0.049	14.7	4.4	1	23	617	639	617	639	0.98

Sequence Information

Coding Sequence: ATGAGTAAATGTAATACTTGTAACAAAAACGTTAATAAAAAGAACCCAGGAATCCAATGTGGCACGTGTTGTAAGTGGATTCATGGCGGATGCGCCGGACTATCCAACGACCAGCTAAATGTTCTCGTCACGACGGATTCGGTGGACTGGAAGTGTAAGAACTGCGCCGGAACCAAACTTAGAAGATTGTCTGGTATAATACCGGAAGATGATGAGGATTATAGCGGATCCGCAAATAATCAAGCTCAAGAAATCCTGAACATCATCAGAAGAGAGCTAATAAACAAACTGGAGTTATGTGGTATTGAGACCGGAAATAACAACGTAGAAGTGATCGTCCACAAATATGCCCAAAGCATTAAGCAAAATCCAGAAGACATAATAAAATCCTATAAAAAGGAGCCTCGCCATGCCGGAATTAAAAAGAATGTTCCGCCTACTATCATTGTTCAACTGAAGGAAGGAGCACGAAATTCTTGGTTGGAAACCTCCAGAAAAATTGAAGTTACTGCTGCAGCCATCGGTCTAGAAGGAAGTAGAAAAATCTATCTACGCGAATCGCTGACCCCTGCAACTGCATTTTTACTCTGGAAGACAAAAGAGGAACTGAAAAATGAATATAAACATGAGGCAGTAAATACTCAGTACGAACTGGAGGTAGAAGGTCTGTCAGTGGAATCTGAAGATCCCCTCATTGATACACAGCTACCACCAGACCTAGTGGATGACTCCATGTCATTAAAGCGAAGCCAGAACACCATTGAGGATTATACAAGTTCAATTTGCCCAGTCGATCAGTCAGCATATTTAGATAAGGAATGGGAGGCAGAAATAAAACTGGAGGTGGAGGGGATTCAAGACCAAAGTGCCGAACAAGACCACGAGCTAGACAACACAAACCATGAGAGGCGAGACCTCACCACCGAAACACAGTCCAGTAAGAATGCGCACGGCTGTGACGTTTGTTACAAGAAATTCAAATTCAAGAGTGACTTACTACGGCATATGAGAATTCATAGCAACGTCAAACCATTTGGCTGCGACATTTGTTCAAGAAAGTTCAAAAGTAGGCATTGCTTACAGCGGCATATGAGGATACACATCGGTGATCTTCCATACGGCTGCCATATTTGTTCAAAGAAGTACTTATTTGAGTGTGATCTGCAACGCCATGTCCGAAGTCATAGAAGTGAAGAACTTAATACAAGCAATGAAAATAGTTTATATGAAGCCGGCGAAGATAATGTGTGCAATTTTTGTTCTAAAAAGTTCACAAATAAAGGAAGCCTGAATCGACACATCCGAATTCATACAGGCGATAAACCGTTCGTCTGTCATGTTTGCGCGAAGAAATTTATAGAGAAAAGCGCTCTAGATAACCATGTGTTAACCCACACGGGCACCAAACCATTCAGCTGTGATATTTGTTCCAAACGATTCACTCTGAAGCTCAATTTGAAGAGGCACGCGGTGGTTCACACGGCGAAAACGCAGCTTAACTGTGATATATGTACCAAGAAGTTCCGTTTTAAGTCCACTTTGAAGTCCCATAGAAGGCTACACGGAGGCGCGAGAATACAGGAACGTAACAAACCGTACAGTTGTGATGTGTGCTCGGAGAAGTTTTCGCACCAAAGATATTTGAACGCTCACGCTCAAATCCACACCAGCGACAAAGTGTTTAGTTGTGAATTGTGCCCGAAAAAGTTCCTACGGAGGACCCATTTGAATAGACACTCTCGATCTCATACAGGCGACCAGCCGTTTACCTGTGATATATGTGCGAGGAAATTCACGCAGAAGGGTAGCTTAAAAGTACACAAGCGCAGTCACGAAGGAGACCGTAAATATAGCTGTCACGTTTGTTCGAAGAAATTCCTAAGAAACTACACCCTGCAGACTCATTTGAAAATCCACGAGAGCCGGGCAACAGTCTTATCAGAAAGCCATACAGACGTAGCCCAACTATAA
Protein Sequence: MSKCNTCNKNVNKKNPGIQCGTCCKWIHGGCAGLSNDQLNVLVTTDSVDWKCKNCAGTKLRRLSGIIPEDDEDYSGSANNQAQEILNIIRRELINKLELCGIETGNNNVEVIVHKYAQSIKQNPEDIIKSYKKEPRHAGIKKNVPPTIIVQLKEGARNSWLETSRKIEVTAAAIGLEGSRKIYLRESLTPATAFLLWKTKEELKNEYKHEAVNTQYELEVEGLSVESEDPLIDTQLPPDLVDDSMSLKRSQNTIEDYTSSICPVDQSAYLDKEWEAEIKLEVEGIQDQSAEQDHELDNTNHERRDLTTETQSSKNAHGCDVCYKKFKFKSDLLRHMRIHSNVKPFGCDICSRKFKSRHCLQRHMRIHIGDLPYGCHICSKKYLFECDLQRHVRSHRSEELNTSNENSLYEAGEDNVCNFCSKKFTNKGSLNRHIRIHTGDKPFVCHVCAKKFIEKSALDNHVLTHTGTKPFSCDICSKRFTLKLNLKRHAVVHTAKTQLNCDICTKKFRFKSTLKSHRRLHGGARIQERNKPYSCDVCSEKFSHQRYLNAHAQIHTSDKVFSCELCPKKFLRRTHLNRHSRSHTGDQPFTCDICARKFTQKGSLKVHKRSHEGDRKYSCHVCSKKFLRNYTLQTHLKIHESRATVLSESHTDVAQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -