Lcor021739.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992071.1:127629-135169[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.2 2.7e+02 2.9 1.3 1 21 52 72 52 73 0.91 2 20 1.4 1.2e+02 4.0 0.1 3 23 102 122 101 122 0.93 3 20 0.0011 0.092 13.9 0.3 1 23 169 191 169 191 0.96 4 20 2.7e-07 2.3e-05 25.2 1.2 1 23 268 290 268 290 0.98 5 20 1.9 1.6e+02 3.7 0.6 2 23 317 339 316 339 0.92 6 20 7.9e-05 0.0067 17.5 1.3 1 23 361 383 361 383 0.98 7 20 7.5e-05 0.0064 17.5 0.5 1 23 387 409 387 409 0.98 8 20 0.66 56 5.1 0.1 1 23 414 437 414 437 0.90 9 20 3.1 2.7e+02 3.0 2.1 1 23 443 466 443 466 0.90 10 20 0.19 16 6.8 0.1 1 13 472 484 472 486 0.89 11 20 0.43 37 5.7 0.4 1 23 524 546 524 546 0.91 12 20 0.04 3.4 8.9 0.8 2 23 570 592 569 592 0.94 13 20 0.0021 0.18 13.0 1.2 1 23 614 636 614 636 0.97 14 20 0.0067 0.57 11.4 2.4 3 23 642 662 641 662 0.97 15 20 0.038 3.2 9.0 1.3 1 23 669 692 669 692 0.87 16 20 0.00069 0.058 14.5 1.1 1 23 698 721 698 721 0.97 17 20 0.0021 0.18 13.0 0.3 1 23 727 750 727 750 0.97 18 20 0.033 2.8 9.2 3.8 1 23 756 778 756 778 0.97 19 20 6.5e-06 0.00055 20.9 0.9 1 23 784 806 784 806 0.98 20 20 0.00016 0.013 16.5 7.9 1 23 812 834 812 835 0.96
Sequence Information
- Coding Sequence
- ATGGACGAGCTGTTAGATGATAAGGGAAAACCCGCCAAGCACAGATCTATCAAAAGATCAGCCAAGGCGGAGGCACGCTTTATGACCAAAAAGAATGCGACCTCGATACTGGCGTGTTGGTCGCTAACGCCATTTAAGTGGAAGACGAATAAATTTCAATGTGCCTTCTGCGAAGAACAATTTATGGAAAGCCACGATTTACGTTGTCACGTTCGCGCGTGTTATACCCATAAGAATGTTAAAGATATCTACAAAACGTTTAAAAAAATGACCCTCATAAACGTCGACGTCACTAACGCTGCCTGTCAGCTCTGTGAGGTCCCGTTCTCGGGTGTCGACCACATGCGGGAGCACGCCATCGAACACGGTTTCGATTTGAATTTGTCTTACTCCGACGGTATACTGCCGTTCCGGCTGGATAACCCGTGGAAGTGTGTGCTATGTGATATCGACCATAACAATTATCTTAAATTATACGAGCACATGAACTGCCACTATCAAAACTACATCTGTTCGACGTGCGGCAAGGCGTTCATGGACGCTCTGCGTCTCCGAAAACATACTGAGCTCCACGTGATCGGTTCCGCTATTGCGGATTCAAAAGATGGTTTGATAGTGGTTAGGCGACATAGAAAGTTAGCCGAGAACGTTTGCGCGAGGCAGATGCGTAGACGTCGTCGTGCTAACAACGAGCTGGCTGAGGAGTCCGACAAAAGGATAGCTATAACGATGATGCGTAGAAACGCATTGACGATTCTGACATGTTCTACCGCGTGGCCGTTTCGATGGTGCCATTCTGCATTTTACTGCTCTTACTGCGATAAAAAGTTTGTCGATCCCTCGTCTTTACGAGAACACGTCCGAAAACATCTGTCAGAAGAAATCACTAAGCGGGTTTTTGCGAAGCTCAAGGAAAACAACATGGCTAAGATAGACATATCGGAGTTACGTTGTAGACTATGTAGAGAAGAATTACATGACATGGATTCTCTTAAAAACCATCTAATCGAACTTCACGACAAAGTATGGTATAAAAATTACAACGACGGCGTCCTGCCGTTTAAATTACATTCTAATGATTTTGAATGTCAAATATGTTTTAAGTCCTTCGTTCTGTTTTCAAAATTAAACGAACATATGAACAGTCACTATAAAAATTACGTTTGTGATGCGTGCGGCAAGGCTTTTATATCCAAGTCCAGGTTTAGGACTCACGTCCAGTCACACGAGATCGGAAGTTTCCCCTGCGGAGAATGCAACGAAGTACTGGATACTAGAGCAGCTCGAAGATCTCACAAAGGGAGAGTGCATAGAAAGGGCATACGTTATTCTTGCCCGCGTTGTTCCGATGTGTTTACGTCTTATCATGCCAGAGTCACACATTTGTTTAATAGACACGAGCAAAAGCTAGACTACAAGTGTTTAATCTGTGGAAAACTTTTTGAAAACAACAGAGACCCCATGAAAATTTTATGGAAAACGAAACGCAAGTATAACGATCACAGACACAATGCAGCGGCAATAATAGAGTTTTCCAATGCCTGCCCGTTCCGATGGAGACGCGGCCTTTTCATTTGCTGGTGCTGCCCCAAAACTTTCGCTGACTTTATCGGTGTCAGAGAACACATGACCGAACACGAAAGTATCGTCGACTCGATAAAGTCCGCCAAGGCCTTAGATCACATAAAAGTCGAAGTGTCTGATCTAAGGTGTAAAATTTGCTCGCGAACGATGAGCGATTTGGACGCTCTCTGTGATCACTTGTCGAACGTGCACGATAAGCAGCTACTGAAAGATGTCGGTTTAGGAGTAACGCCGTACCTGTCGTCCGATAGAGAATTCATTTGCGCGTTTTGCCGCGAACGATTCGCCCTATTCACTAATTTAAACAGGCACATGAACCAACATTACCCGAACAACATCTGCTCCCACTGCGGTAAAACTTTCATGGCGAAATATCGCATGCTATCACACCAATTAACGCACGAATCCAAACCGAAAACTTTCAAGTGCTCCAAGTGCAAGGAAGTATTCGAGACGAAGGCGCTCAGGGATACTCATTTCAAGGGCGTTCACGGTCCCGAGCACAGATATAGGTGTCCGTACTGCAGCGAGACGTTCATGCGGTACATAGACAGGCTGCGTCACATGAAGCAGGCGCACGACAAGGTCGTGGAGTACCCGTGCCATCTGTGCCCCGCCGTCTTCCCCATCAGCGATCAGAGGACGAAGCACATCAGATACGTGCACATAAAAAATCAAACGCACCAATGCGAATTTTGTCCGAGTAAATTTGTCACCGCCCACCGTCTCAAGAACCATCTGGTCCGCCACATCGGGGAGAGAAAATTCGAGTGCAGCGTTTGCAAGAAAAGTTACGCGAGGATTAAAACATTAAGGGAACATATGCGAATACACAACAACGATAGGCGATTCGTCTGCGAGTACTGTCACAATTCCTTCGTACAGAAATGCAGCTTAAAGAGTCACATACGGACGCATCATTCTCATGCGGAAGCCATGAAGAAACTGGAATTATCGTTGTGA
- Protein Sequence
- MDELLDDKGKPAKHRSIKRSAKAEARFMTKKNATSILACWSLTPFKWKTNKFQCAFCEEQFMESHDLRCHVRACYTHKNVKDIYKTFKKMTLINVDVTNAACQLCEVPFSGVDHMREHAIEHGFDLNLSYSDGILPFRLDNPWKCVLCDIDHNNYLKLYEHMNCHYQNYICSTCGKAFMDALRLRKHTELHVIGSAIADSKDGLIVVRRHRKLAENVCARQMRRRRRANNELAEESDKRIAITMMRRNALTILTCSTAWPFRWCHSAFYCSYCDKKFVDPSSLREHVRKHLSEEITKRVFAKLKENNMAKIDISELRCRLCREELHDMDSLKNHLIELHDKVWYKNYNDGVLPFKLHSNDFECQICFKSFVLFSKLNEHMNSHYKNYVCDACGKAFISKSRFRTHVQSHEIGSFPCGECNEVLDTRAARRSHKGRVHRKGIRYSCPRCSDVFTSYHARVTHLFNRHEQKLDYKCLICGKLFENNRDPMKILWKTKRKYNDHRHNAAAIIEFSNACPFRWRRGLFICWCCPKTFADFIGVREHMTEHESIVDSIKSAKALDHIKVEVSDLRCKICSRTMSDLDALCDHLSNVHDKQLLKDVGLGVTPYLSSDREFICAFCRERFALFTNLNRHMNQHYPNNICSHCGKTFMAKYRMLSHQLTHESKPKTFKCSKCKEVFETKALRDTHFKGVHGPEHRYRCPYCSETFMRYIDRLRHMKQAHDKVVEYPCHLCPAVFPISDQRTKHIRYVHIKNQTHQCEFCPSKFVTAHRLKNHLVRHIGERKFECSVCKKSYARIKTLREHMRIHNNDRRFVCEYCHNSFVQKCSLKSHIRTHHSHAEAMKKLELSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -