Lcor024241.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992114.1:3658221-3666536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.21 17 6.7 0.1 3 23 141 161 139 161 0.96 2 14 0.0066 0.56 11.4 3.1 1 23 267 289 267 289 0.99 3 14 0.00014 0.012 16.6 0.5 1 23 295 318 295 318 0.96 4 14 0.32 27 6.1 6.1 1 23 323 346 323 346 0.91 5 14 3.4e-06 0.00029 21.7 0.8 2 23 520 541 519 541 0.97 6 14 5.4e-05 0.0046 18.0 2.0 1 23 547 569 547 569 0.98 7 14 1.3 1.1e+02 4.2 6.2 1 21 620 640 620 642 0.93 8 14 0.0036 0.31 12.2 0.9 1 23 677 699 677 699 0.96 9 14 5.2e-05 0.0044 18.0 0.1 1 23 705 727 705 727 0.96 10 14 0.0086 0.73 11.0 4.8 1 23 736 758 736 758 0.99 11 14 0.00013 0.011 16.8 0.6 2 23 801 822 801 822 0.97 12 14 0.0072 0.61 11.3 5.2 1 23 841 863 841 863 0.96 13 14 2.5e-06 0.00021 22.2 0.7 1 23 869 891 869 891 0.98 14 14 6.1e-05 0.0051 17.8 5.2 1 23 897 920 897 920 0.98
Sequence Information
- Coding Sequence
- ATGGTCTCGACTCTCGAGTCGACTCTCGCGACTCGCCGCGCCGGTTTGGAGGAGTTTAGCACAGACATAGAACAAGATAGATACTGCATGTGTATCATACACGTGAGTTCAACAATGATGGCTGAAGATTTTGATCCATTAAGCTACGGTTGTGCTGTTTATAATCAATTTGTGAGCTGCCAAGATTTAGCAAACTCTATTCCAATAGATCAGCAACTCACAAATGGTGGACAACTGGATCAAAATGTTTATAATGCTTATGAAAATACAAACCAACCACACGCAGCAGAAGCACTCACAAACTATAGTAATAATGTGGACGTCAAACCTGATATATCTGCCACAAGCAGAAAGAAAAAAAATGGTCGACTTAAAAACATGTCTGTGAAAATATCACAGCCGGACTTCAAATTTTACGGTTGCTCCCTATGTAACATCTGCTACCCCACGTTGCCTGAGCTGGACGTGCATGTGGCCTCGCACAACGACCGCATCACCAGCTACGATCTGAGGATAAAAAATCAAATCAAAAAGAGGAAATTAAAAAAAGAAACAAAAAAACTTAAAAAATTAAAAGATATTGTAAAAAAAGAAAATGAACTCTTGGACATAGAGATAAAGCCCGAGGATGGTTACATCGGGACAGAGAAAGCAAATGAAATGAATCATCCCAAAGAGAAACAACCCACGGAAGAGAGGGATGTCACTAACGGCCAGAATGATCCAAACCAACTAAATGCTAGTGATCCAAATGAGCTGATGGCTAAAAAGCAGGAGCTGCTCAATTTACAGAAAATATACAAATGTTTTGCATGTTTCAAACAATTCTCTCTTAGCTACTACCTAAAACTTCACGTTAGATCTCACACAGATGAGAAACCTTATGTATGTGCACAGTGTGGACAGTCGTTTATCACGGCGAGCAAACTCGGTCGACATAACAAGCGGTACCACCTGGCCATCAAGTATCAATGTAGGATATGCTACAAATTATTCTGTAGATTTGAATTCTTGACGAGGCATTTTGACAACAAACATGCTGAACACAAATTAGAAGGAGAGCCTTATGACTACAATGCAATATTGCCGTACCTTAAAGAATTAGAGGAGCAATTAAGAGAAAAAGAGGAGGAAAAAGAAAAAAATAAAGTAAAAACTACGGACGCCTGGGGAGATCTGTGGCCCATGGAGACTCCTGCGACCCAGGAGGTTAAAGAAGAACAAATGAAGGAGATAGAAGTTCCCATTAAAGAGGAAGTGTTCAACCCCGAACCGATCACTATAGAAGAAGTTAAAGTTGATCCTATTGATTCCGTTGAGATAAAATTAGAGCTGGAGGAAGCTCCCAGGGAGATGGAGGACTGCCGCAGTTATGATGATGATGATGACAATGTAGAGGAGGATAATAAGAGTGATGTAAAGAGAGAGATGGCAAAAGTTAAAGATGATGATGGGGACGTAAAGAATGAGGCGACATCAGACGAGGACTACTTCCCGACGAATACCTGGGTGTCGAGCCCCAAGGATGAGCCGCCGGCGAAGGGCAAAGGCAAGCTGGAGTGCCCCGTGTGCCACAAGACCGTGAGCTCCGCGTCGTACATGCGCGTGCACATGCGCACACACTCCGGCGAGAGGCCCTACCGCTGCCCGCACTGCGATCTGGCCTTCATCACCGCCAGCAAGATGCACCGGCACGCGCTCACGCATCCCGAGACCTGGGAAGACAATGTTAAACCAGAGGTAAAAACGGAGACGGAAGATGGAGACACCGACAAAAAAGGAAAAATGAATGGTCTGGCAGATTTTCTGAAAAAGACCAAAGGGGAGAAGAAGAAGAACGGCTACCAGAAGCGGCCGTTCTCGTGCGAGTTCTGTCAGAAGAGGTTCCTGCACCAGGCCACGCTACAGGTCCACAAGAAGTGTCACGAGGGCGAGCCGCTGGTGTACAAGTGCACGTACTGCCTGGCCGAGCAGCCGGACGAGGCGGCGCTGCGCGAGCACGAGGCCGCGCACGCCGGCCCCAAGCCCTACCTGTGCACCGTCTGCGGCCGCACGTACGCCAAGCGCGAGACCATGGTCTACCACCGCAAGTCGCACGCCGAGCACGCGCCCTACATCTGCGACGTGTGCACCAAGGGCTTCTCGTCCGCCGGCAAGCTGGAGCGGCACCTGGCCGGCCACCGCGCCGCGCGCTTCGTGCTGCGCTACGAGTGCCCGGTGTGCGCGCACATGTTCCACACGCGCTACCACGTGCAGCTCCACCTCAACACGCACCAGCGCGAGGGCCTCATCCGCGAGCAGGACCGGCCGCACGTGCTCGCCATGGTGCTGCAGAACGCGCGCCGCCTGCCGCGCGCCGGCGCCGCCCCCGCCGACCCGCCGCCCGACGAGCGCAGCCGCGTGTGCAACATCTGCGGCGAGGTGTTCCAGCACTTCTACTACCTGGAGGAGCACCTCAAGTCGCACGGCGCGCGCATCGCCGTCGCCGACGCCGCGCCTGACCCGCCCGACGACCGCAAGCACGTGTGCCCGGTCTGCAGCAAGAGCTTCAAGCTGCACTACTACCTCAAGCTGCATAGCTTCACGCACACCAAGGAGAAGCCGTTCATCTGCCAGCAGTGCGGCAAGGGGTTCATCACGCGCGGCAAGCTCAAGCGCCACCTGGAGACTCACTCGGGTCTGAAGAAGTACCAGTGCCACATCTGCTGCAAGTTCTTCACGCGCCCTAGCTACCTGCGCATCCACGTGCGCACCATCCACGGCACGCAGGACTACAACTTCCGCCTCGCCGCGCCCCGCCCCCCGCTCGACGAGTACCCGCCCCCGGACCACCCCGCGCCGCCCCTCTGCTAG
- Protein Sequence
- MVSTLESTLATRRAGLEEFSTDIEQDRYCMCIIHVSSTMMAEDFDPLSYGCAVYNQFVSCQDLANSIPIDQQLTNGGQLDQNVYNAYENTNQPHAAEALTNYSNNVDVKPDISATSRKKKNGRLKNMSVKISQPDFKFYGCSLCNICYPTLPELDVHVASHNDRITSYDLRIKNQIKKRKLKKETKKLKKLKDIVKKENELLDIEIKPEDGYIGTEKANEMNHPKEKQPTEERDVTNGQNDPNQLNASDPNELMAKKQELLNLQKIYKCFACFKQFSLSYYLKLHVRSHTDEKPYVCAQCGQSFITASKLGRHNKRYHLAIKYQCRICYKLFCRFEFLTRHFDNKHAEHKLEGEPYDYNAILPYLKELEEQLREKEEEKEKNKVKTTDAWGDLWPMETPATQEVKEEQMKEIEVPIKEEVFNPEPITIEEVKVDPIDSVEIKLELEEAPREMEDCRSYDDDDDNVEEDNKSDVKREMAKVKDDDGDVKNEATSDEDYFPTNTWVSSPKDEPPAKGKGKLECPVCHKTVSSASYMRVHMRTHSGERPYRCPHCDLAFITASKMHRHALTHPETWEDNVKPEVKTETEDGDTDKKGKMNGLADFLKKTKGEKKKNGYQKRPFSCEFCQKRFLHQATLQVHKKCHEGEPLVYKCTYCLAEQPDEAALREHEAAHAGPKPYLCTVCGRTYAKRETMVYHRKSHAEHAPYICDVCTKGFSSAGKLERHLAGHRAARFVLRYECPVCAHMFHTRYHVQLHLNTHQREGLIREQDRPHVLAMVLQNARRLPRAGAAPADPPPDERSRVCNICGEVFQHFYYLEEHLKSHGARIAVADAAPDPPDDRKHVCPVCSKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHSGLKKYQCHICCKFFTRPSYLRIHVRTIHGTQDYNFRLAAPRPPLDEYPPPDHPAPPLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178882;
- 90% Identity
- iTF_01248429;
- 80% Identity
- -