Lcor003570.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992056.1:2175646-2180833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6e-07 1.4e-05 25.9 3.6 1 23 107 129 107 129 0.98 2 10 5.5e-05 0.0046 18.0 2.8 1 23 135 157 135 157 0.96 3 10 7.8e-05 0.0066 17.5 2.7 2 23 164 185 163 185 0.96 4 10 9.4e-05 0.008 17.2 2.5 1 23 191 213 191 213 0.98 5 10 1.6e-05 0.0014 19.6 0.8 1 23 239 261 239 261 0.97 6 10 5.8e-06 0.00049 21.0 0.5 1 23 267 289 267 289 0.97 7 10 0.0001 0.0088 17.1 3.5 1 23 295 317 295 317 0.97 8 10 2.2e-05 0.0019 19.2 2.1 1 23 323 345 323 345 0.97 9 10 2.4e-07 2e-05 25.4 1.5 1 23 351 373 351 373 0.96 10 10 0.061 5.2 8.4 4.1 1 21 379 399 379 400 0.94
Sequence Information
- Coding Sequence
- ATGCTAAAACCGGATTTTATAAAAATGGAACCAGTTGAGAATGAGGAGGTTTCTATCAAAACCGAACAGGAAGAAACCAACATTGTTCTTAAACCAGAGATGGTTTTTGTCAAAACAGAACCAGTAGAGGAACCGGTTACTAAAGCTGCAGAATGTGAAGTTATTGAAATTGAGTTAATACCAGTGATCAAATCTGAACCAGATGATAACACAGATAATGAGTTGGGAGATAAGTGTGATATCAAAAAGAAGTTGCGCGAGAGTAAAAAACGTTGTGAAGATATCGACGGCACCAAAAAACGAAACAAATCCTACACATACACTTGCGACGTTTGCAACAAGAATTACACTCGATCCGATCATTTAAAAAGACATATGCTAAGTCACACAGGCGAGAGACCGCACGCCTGTCACGTTTGCGACAAAAAATTCACCATCGCTAGGTACCTAAAAGACCATATAAAAATACACGTAGGTGAGAAATCCTGCACCTGTGACGTTTGCGGTAAAATCTTTTATACGAAGCAGGATGTAAAGCGACATAAACTGATGCACAGTGACCACAAGAAGCACAAATGTGATATTTGCAACAAGCGGTTCACTTGGTCGGGGAATTTGTATGCGCATAAGCAGACACACATAGGTCCGAGTCCGTACACCAATAAGAATCCGTTCACCTACCTGAACCCTGATAAGCAGGTAGGCGTAAAACTGCATACGTGCGAAATATGCAACGAAACGTTCACAGCGCCTGCGTTTTTAAAAAAGCATATGCTTCTCCATTTCGCGGAAAAGGAATTTAATTGTGATATATGTAGTAAGAAGTTCGCTAGTTCGATCGGTTTGAAAAGACATCAGTTGGTACATACGGGCGAAAAAGCATACGCGTGTGACACATGCGGCAAAAGATTCGCGTACAGCTGCCATTTGAACGATCACAAGCTAATACACACTGGCGACAAACCGTTCGCCTGTGAAATTTGCAGCAAAAAATTCAGATCTAACAGGCAGTTAAAGATGCACAAGCTATCACATACGGACCACAAACCGCACGCGTGTGATTTCTGCGGCAAGAAATTCACCCAGCTGGGCAACTTGCGACGCCATATACAGGTGCATACCGGCGAAAAAACATACAGATGTGACGTCTGTTCTAGAACTTTTATAATGCTTTGTCGTCTAAAAAGGCATAAATGTGTTACTCAAGATCAAGGTGCGACGTAA
- Protein Sequence
- MLKPDFIKMEPVENEEVSIKTEQEETNIVLKPEMVFVKTEPVEEPVTKAAECEVIEIELIPVIKSEPDDNTDNELGDKCDIKKKLRESKKRCEDIDGTKKRNKSYTYTCDVCNKNYTRSDHLKRHMLSHTGERPHACHVCDKKFTIARYLKDHIKIHVGEKSCTCDVCGKIFYTKQDVKRHKLMHSDHKKHKCDICNKRFTWSGNLYAHKQTHIGPSPYTNKNPFTYLNPDKQVGVKLHTCEICNETFTAPAFLKKHMLLHFAEKEFNCDICSKKFASSIGLKRHQLVHTGEKAYACDTCGKRFAYSCHLNDHKLIHTGDKPFACEICSKKFRSNRQLKMHKLSHTDHKPHACDFCGKKFTQLGNLRRHIQVHTGEKTYRCDVCSRTFIMLCRLKRHKCVTQDQGAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00934062;
- 90% Identity
- iTF_00935023;
- 80% Identity
- -