Lcor018862.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992123.1:30807-37849[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00041 0.035 15.2 3.0 1 23 81 103 81 103 0.98 2 12 5.8e-07 4.9e-05 24.2 0.4 2 23 118 139 117 139 0.97 3 12 9.7e-07 8.2e-05 23.5 2.1 1 23 145 167 145 167 0.97 4 12 0.0013 0.11 13.6 0.2 1 21 173 193 173 194 0.93 5 12 0.0011 0.094 13.8 0.2 3 23 205 226 204 226 0.89 6 12 0.0005 0.042 14.9 0.6 2 23 282 304 281 304 0.96 7 12 1.2e-05 0.00099 20.1 0.2 1 23 309 331 309 331 0.99 8 12 1.5e-06 0.00013 22.8 2.9 1 23 337 359 337 359 0.97 9 12 0.00064 0.054 14.6 0.0 1 23 365 387 365 387 0.97 10 12 9.3e-07 7.9e-05 23.5 4.0 1 23 393 415 393 415 0.96 11 12 1.5e-05 0.0012 19.8 3.3 1 23 421 443 421 443 0.99 12 12 7.4e-06 0.00063 20.7 1.3 1 23 449 471 449 471 0.97
Sequence Information
- Coding Sequence
- ATGGATGTTTCATCACAACTTGCTGCTAATATGGAAGATTTGGCCAAACTGTTCCAATCCCGTATGGACGTCTACGAACAGAGACTTCATGACACTGCTGCCGCACCAACTCATCCGGACGTCACCAGTTTGAGCAGTGCACACGAGGGAGGAATCAAAGAAGAAATCCTCGATCGAGAAATAAAAAAGGAAATCGTCGATGACGACGGCCGCTTCGACCCCGCAATCAGCACCGTCCTGTACACCTGCCGCGTCTGCAACCACATGTTCAGCACCATCACCCTCCTCAACAAACATAAAGCCACTCACAGCGCCAGCAGAGTAAAGGACACGTCGGCGACGAAAAAGGTGCCCTGCTCCATCTGCGGCAAGAGCTACGCGGACAAGAAGACCCTCAACAGGCACAAGCGGATCCACTCGGACGCCCGGCCCTTCGCCTGCGAGGTCTGCGGGAAGGGCTTCACCCGGCGCGACCACTACAACAAGCACCGCCAGATCCACGCCGAGCCGCGCTGGTACTCCTGCACCGACTGCGGCGCGCGCTTCCCCTCCACCGCCGAGTTCGAGGCCCACGAGTGCACCCCGCCCCCCGCCGAGCCCACGCCCAGCGCCTGCGACGTCTGCGGCGAGGTCTTCCCGCGCTGGGACCTCTACCACCAGCACAAGACCGACGTCCACGGCGTCACGCTCTTCCCCGACGTCACCATCGAGCGGGTCCCGCCCCCCGCCTCGCCCCCCGCCTCGCCTCCCGCCCCGGCCGAAGCCGAGAAACAGCGGGAGATCAAAAAACAAAAGCCGCCCGTCGTGTTCGCCGTGAAGCGACGCAAGAAGAGGGACGAGCTCTCGTGCGACAAGTGCAGGATCCGGTTCGCCAACAAGTATCGGCTGCAGAACCACGTGCTGACCGCGCACCGCGGGGTGAGCTACGAGTGCGACACGTGCGGCAAGGTGTTCCTGCGCCGCGCCAACCTCGGCCTGCATCTGCGCACGCACACCGGCGAGCGCGGCTACTGCTGCGACGCGTGCGGCAAGACCTTCACCTACAAGAGCAGCCTCAACGTGCACCGGCGCGTGCACTCCGGCGACAAGCCGTACGCGTGCGAGGTGTGCGACAAGCGGTTCGCCGCGTACGGCCAGCTCGCCGAGCACAAGCTGGTGCACTCGGACGTGCGCGCCTTCGCGTGCGACGTCTGCGGGAAGAGCTTCAAGCGGCGCCGCCACCTCCGCAAGCACCTCACTTACCACTCCGGCGAGAAGCCGTACACGTGCGACGTGTGCTGCCGCAGCTTCACCCGCAACGACAACTACACCATCCACATGCGCATACACACCGGCGAGAAGCCCTTCGTGTGCGACGTCTGCGGCCTTACCTTCAGCGAAAACCGACACCTCAAAAAACACAAAATCGTTCACGAGTGA
- Protein Sequence
- MDVSSQLAANMEDLAKLFQSRMDVYEQRLHDTAAAPTHPDVTSLSSAHEGGIKEEILDREIKKEIVDDDGRFDPAISTVLYTCRVCNHMFSTITLLNKHKATHSASRVKDTSATKKVPCSICGKSYADKKTLNRHKRIHSDARPFACEVCGKGFTRRDHYNKHRQIHAEPRWYSCTDCGARFPSTAEFEAHECTPPPAEPTPSACDVCGEVFPRWDLYHQHKTDVHGVTLFPDVTIERVPPPASPPASPPAPAEAEKQREIKKQKPPVVFAVKRRKKRDELSCDKCRIRFANKYRLQNHVLTAHRGVSYECDTCGKVFLRRANLGLHLRTHTGERGYCCDACGKTFTYKSSLNVHRRVHSGDKPYACEVCDKRFAAYGQLAEHKLVHSDVRAFACDVCGKSFKRRRHLRKHLTYHSGEKPYTCDVCCRSFTRNDNYTIHMRIHTGEKPFVCDVCGLTFSENRHLKKHKIVHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164577;
- 90% Identity
- iTF_00164577;
- 80% Identity
- -