Lcor006453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lysandra coridon
Gene Symbol
-
Assembly
GCA_905220515.1
Location
HG992098.1:1891225-1908095[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 8.6e-05 0.0073 17.3 0.1 3 23 125 145 124 145 0.97
2 17 4.5e-06 0.00038 21.4 1.2 1 23 151 173 151 173 0.99
3 17 4.8e-06 0.00041 21.3 2.7 1 23 179 201 179 201 0.99
4 17 2.5e-06 0.00021 22.2 3.4 1 23 216 238 216 238 0.98
5 17 4.4e-05 0.0038 18.2 3.1 1 23 253 275 253 275 0.98
6 17 5.5e-07 4.7e-05 24.2 1.5 1 23 290 312 290 312 0.99
7 17 0.00014 0.012 16.7 2.8 1 23 318 340 318 340 0.98
8 17 3.2e-05 0.0027 18.7 1.6 1 23 346 368 346 368 0.98
9 17 0.031 2.6 9.3 1.8 1 23 375 397 375 397 0.98
10 17 5.2e-07 4.4e-05 24.3 2.3 1 23 403 425 403 425 0.99
11 17 0.036 3.1 9.1 1.8 1 23 432 454 432 454 0.98
12 17 2.1e-06 0.00018 22.4 1.5 1 23 460 482 460 482 0.99
13 17 9.4e-05 0.0079 17.2 0.8 1 23 489 511 489 511 0.99
14 17 2.4e-06 0.0002 22.3 1.9 1 23 517 539 517 539 0.98
15 17 0.0017 0.15 13.2 0.3 1 20 545 564 545 567 0.93
16 17 2.4e-05 0.002 19.1 1.3 2 23 574 595 573 595 0.97
17 17 3e-06 0.00026 21.9 1.4 1 23 601 624 601 624 0.97

Sequence Information

Coding Sequence
ATGTTTGAGCAGCAGATCAAGGCCGAGCCCATGAGCTTCTACACACACCAACATGTAAACAGCGGCCCACCCACCATAATCCGTTCGGAGTCCAACCATCCCATCATCAACATGAACCAGCACCAGCACGAGGACTCCAAGGACAGCCTGATGCAGCAGCAGCACCAGGAGCTCATGGAGCACCAGGACATGCAGCAAGATGATGATGATGTCGACAATTTGAGCTTCAAGGGGATGGAGGATGAAGGAGTTGAAATGGACATGGACGGCAGACAATGTGCACAGGGAATGGGTGTTGACATGGGTTCAATTCAAACAAAAATGGAAGTATCAAACGGCCCGCAATCAATTCCACGCTCAAAACCTCAAGCTTGTAAGGTATGCGGCAAAGTGCTGTCATCGGCGTCGTCGTATTACGTCCACATGAAGTTACACTCCGGGAACAAGCCGTTTCAATGCACAGTATGCGACGCAGCGTTCTGCCGCAAGCCGTACCTGGACGTGCACATGCGCACACACACCGGCGAGCGGCCGTTCCAGTGCGACCTGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGACCGCACAAGTGCGAGCTCTGTGGGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAGCACAGACGCGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGTCACGGAAAGATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCATATCAATGTGACGTCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACCCATAAACGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATGAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAGTATACATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGACCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCTTCGCTCAACATACACAAACGGACGCACTCAGTGCAGGGTCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCATTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACCCTCAACATTCACAAACGAACGCACACAGTGCAAGGTCGGCCGTATCAGTGCACGGAGTGTCCTGCGGCGTTCACGTGCAAGCCGTACCTGGAGATTCACATGCGCACACACACCGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACGCTCAACATCCACAAGCGAATACATACCGGAGAACGTCCCTACGCCTGTGATATCTGTCAGAAAAGATTTGCTGTGAAGAGCTACGTTACCGCGCACAGGTGGTCGCACGTGGCCGACAAGCCGCTGAGCTGCGAGCGCTGCTCTATGACGTTTACGTCCAAGAGCCAGTTCGCACTGCACATCCGCACGCACGCCACCGGGCCCTGCTACGAGTGCAGTGTGTGCGGCCGTACCTTCGTGCGGGACAGCTACCTCATACGGCACCACAATCGCGTGCATCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATCAGCACCATCAACAGCGTCGCCACCAACACGTCCAACTACGACTCGCCCGGCGTCTGCGACCTGAGTTTTGTGCCAATGGTGAACCGCTATATGACGTCGCAAGGCACGCAGGTGTCAATGGACACGACCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCTATTTATAACGACGCTACTTAA
Protein Sequence
MFEQQIKAEPMSFYTHQHVNSGPPTIIRSESNHPIINMNQHQHEDSKDSLMQQQHQELMEHQDMQQDDDDVDNLSFKGMEDEGVEMDMDGRQCAQGMGVDMGSIQTKMEVSNGPQSIPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLDVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPHKCELCGMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYECDACLKRFTQKSSLSIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCERCSMTFTSKSQFALHIRTHATGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSISTINSVATNTSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMDTTKMSAMSPQSIASIYNDAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01151388;
80% Identity
iTF_01248386; iTF_01217673; iTF_00934040;