Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0056 8.3 7.2 0.2 11 43 12 41 8 42 0.83

2 7 0.69 1e+03 0.5 0.3 18 43 64 87 55 88 0.59

3 7 5.5e-07 0.00081 20.0 0.6 3 43 72 115 70 116 0.86

4 7 0.016 24 5.7 5.5 17 38 119 137 117 143 0.87

5 7 0.00049 0.72 10.5 3.4 18 43 175 197 164 198 0.93

6 7 0.075 1.1e+02 3.6 2.9 4 24 190 210 187 226 0.88

7 7 0.019 29 5.4 0.9 17 39 231 250 216 254 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0056	8.3	7.2	0.2	11	43	12	41	8	42	0.83
2	7	0.69	1e+03	0.5	0.3	18	43	64	87	55	88	0.59
3	7	5.5e-07	0.00081	20.0	0.6	3	43	72	115	70	116	0.86
4	7	0.016	24	5.7	5.5	17	38	119	137	117	143	0.87
5	7	0.00049	0.72	10.5	3.4	18	43	175	197	164	198	0.93
6	7	0.075	1.1e+02	3.6	2.9	4	24	190	210	187	226	0.88
7	7	0.019	29	5.4	0.9	17	39	231	250	216	254	0.82

Coding Sequence: ATGTCGTTGCGGGGAAGGCTGGAACGCACTCTCAAAATCGATACATCCGTTATCTCCTGCAAGCTGTGTCACACATCGATGCAGGACGTGGACTCTTTGATCGACCATTTGATGTCGGAGCACGAGGCGCGATACGATAAATCCGTCGATAATAATTTGCAACCCTTCAAATTGATCAAAGATAAATACCTGTGTCCGATTTGTGAAGAGGAAGTCTTTCGATACTTCGGTATTCTCCTCAAACATATCAACTCGGACCACAACGACAACAGTATTATCTGCGATTTCTGCGGCAAGGGTTTCAAGCAGGTGTCGAATTTGAAAATACACATAGAGCACGTCCACACCGGATCTTGCGAATGCGAAATTTGCGGATCCAAATTAAAAAATCAGTCGTGCCTAAAACGGCACAAGGCTAAATATCACAACGAGAAGGATTTCAAGTGTCCGAAATGCCCGGAGCGATTCGAGAGCCAGTACCACAAACAGAAGCATCTGATCCAGGCGCACGACATCGGGCACAGATGCAGCTACTGCGACAAGATATTCACCAGGAACTCCTTCATGAAAGATCACATACGGCGGACGCACTTGAAGGAGAAGGACGTGGTCTGCTCGGTCTGCAACGACAGGTTCTTCGACAACTACCATTTGAAGTTGCACATGGTGAGACACCAGGGCCAGCGATCGTTTATCTGCGACGTGTGCGGCAAAGCTTTCCTGCGTCGAAGAAATTTGAGCACCCACATGGAGATGCATAAGAAGTATGGTCAAGTTAACGCGCTATAG
Protein Sequence: MSLRGRLERTLKIDTSVISCKLCHTSMQDVDSLIDHLMSEHEARYDKSVDNNLQPFKLIKDKYLCPICEEEVFRYFGILLKHINSDHNDNSIICDFCGKGFKQVSNLKIHIEHVHTGSCECEICGSKLKNQSCLKRHKAKYHNEKDFKCPKCPERFESQYHKQKHLIQAHDIGHRCSYCDKIFTRNSFMKDHIRRTHLKEKDVVCSVCNDRFFDNYHLKLHMVRHQGQRSFICDVCGKAFLRRRNLSTHMEMHKKYGQVNAL

Sequence clustering based on sequence similarity using MMseqs2