Basic Information

Insect: Lysandra coridon
Gene Symbol: clz9
Assembly: GCA_905220515.1
Location: HG992090.1:2773524-2776682[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.3e-07 0.00012 22.3 0.0 1 36 10 45 10 50 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.3e-07	0.00012	22.3	0.0	1	36	10	45	10	50	0.92

Sequence Information

Coding Sequence: ATGGAAACGAAGAAACGTAAAAAATACACTAACGCAGAGCTAATTTCTGCTTTAGAGTTAGTAAAACAAGGTACGAGTATATACCAAGCATCTCGACAATTTAATATACCAGAGACGACAATAAGGAACAAGCGAGATGGTATATATGAAAATGACACTTGTGGTGTACAGCCTGTGCTAAATATTCAAGAGGAAAAACGAGTCGTCGATTGGGTTCACTATCTTGGTAAATGTGGATTTCCAGTCACCAAAGAACAGTTGCTGGATACTGTCGCTGCACTAGTGAAGAATTTAGAACGCCCTAATCCATTTAAAGATGGAAGACCCGGAAAAAACTGGTACCTGGGTTTTTTGAAACGACATCCGACAGTAAGCAAACGCGTGGTACAAAATCTTCCTTTGAGTAGAAATCAGATCACAGAAGGATCAATACGAGGGTGGTTTGGAAGAGTTCACTCGTATTTTGAGGATAACAATTTGTTCGAAGTTTTTGAGGACCCCAAACGCATATACAACTGCGATGAAACAGCTTTCTTTTTATGTCCGAAAGAGAAGCAAGTTTTAGTTAAAAAAGGTAGCAAACGTGTTTATAATAGGGTGGCCAACGATGAAAAAGAGTGTTTGACTGTTTTAGTTACTGTTTCAGCGGATGGAGACATTGCTCCTCCTATGGTACTATATCCATATAAGAGAGATATCCCAAAAAATATAAAATTATCTGTACCTGGATGGTGGGGACTCGGATACACCGAATCTGGCTGGATGACCATGGAGTCTTTTTACGAATATATTACTAATGTATTCTATCCTTGGCTTTGCGAAAACGAAGTTACTTTCCCTATAGTGCTATTTTTAGATGGCCACACATCACATATATCTTTACCTTTGTCAACATTTTGTAAAGAAAAACAAATCGTGTTGGTTGCTTTACTGCCGAATGCTACACACGTCTTGCAACCTCTTGACGTTGCTGTATTTAGACCAGTGAAAGGGACTTGGAAAGATATTGTCCATGATTTCCGTATTAACAATGATTACAAACGACTAAAGCGAACAGATTTTGCTAAAGAAGTTCAAAAATGTTTTGACAGATGTTTGAAGGCAGAAACAATAAGAAATGGGTTCAGATGTTGCGGAATTTTCCCGTTTGATCCAAACAATATAAACTATGAGAAACTTTTACAACAAGCAAAACCACCACAAGAAAATCAACTTACAACTGACGATAGTACGGATCAGAATAATGAGTCACAAAATACAGTATCTGTAGATAAAAATGAATGGTTTAAAAAACAATTTGAGAGTCGACTGTCACCAGAAACTTTGAAGAAATTTAAAGGTGCAGACGGTCATTGGACTGGAGACCAAACGTACGAAAAGTTGTTTTTATTTTGGTGGAACATTGCGTCAGAAAACCGCGATCATCAGGCTAATACTAGTTTTGAACTAGGAAACACAACATTAACTAATAATGTTGATCAAAATGATATATCAGAAGTGATTTTTAACTTAGAGTTGGGACCTGATAGTGTTCTAAGCTTGTGCAGCATAGAGGATACTAGGAGACATGAAGAGGTGATACCAACAACTGACCCAAAATTTATACTCCCACCATCGCAACTATTTCCTAGACCTGAAAATAATTCCATATCCATGTCTGCAAAGATTCCATCTCAAAATGACGAGATTATTAAGTCAAATACTACTGCAGATGAATTTATAGAGCATCTAAAGCGAACAGAAAAAGAAAAAGATGAGAAAGAAATGCTTAAACAAAAAAGAAAAAATGAAGCTGTAGAAAAGCGAAAGGAAAAGGAAAATATAAAACGACTAAAAGAAACGCAAGCATTACAAAAAAACAAAGAGTCCGTCTACAAACAGAAAACAGTCCCGAAGAAAAAAGGTTCACCAATAGAAAAGCCAGGCAGCTCTCAGCATGTAACTCCTGCTAAGAAGGGCAACAAGCAATCCGGTGAACTGAAGACCTCGTTACGAAGAAAATGTGGTAGCTACGACGATTGTTCTGATTCAAACTTTTCCTTATCAAATAAAAATTCTGACAAAAAACAGAGCAAGTTCTTTAAAAAAAGTGTTTCACCCATAGCAGACTGCTCTCATCAAGTAACTCCAGCTAAGAAAAGAGGCTACAAGGAATCGAGTGAACAGAACACCTACCTAGGAAAAGAAGTTGGCAGCGACGACGATTCTCCTAATTCAAATAATCAATTTTCAATTGTGGGCAAAGCAAAACGCATTTGTTTTTTCGACACTGATTCTGACGACTCTGTAGTTACTGCAAATGAATTGACAGAACACCAAAAGCTAAAAGAAAAAGATGAGAAAGAAATGCTTAAACCAAACTTTGAGGCTGTAGAAAAGGAAAAGGAAAGACTAAAAGAAACGCCACAGGTATTACAAAGTAATAAAAAGTCCGTCAATAAACAGAAAACGGTCTCAAAGAAAACATTTTCACCGAAAGCAAAGCCAGGCAGCTCTCAGCAAGTAACTCCTGCTAAGAAGGGCAACAAGCAATCGGGTGAACTGAAGACCTCGGTACTAGGAAATGTTGGCAGCGACGACGATTCTCCTAATTCAATTAATCAACTTTCAATTGTGGACAATGCAAAACGCGTTTGCCTTTTTGACACTGATTCTGACGATTCAGTTTAA
Protein Sequence: METKKRKKYTNAELISALELVKQGTSIYQASRQFNIPETTIRNKRDGIYENDTCGVQPVLNIQEEKRVVDWVHYLGKCGFPVTKEQLLDTVAALVKNLERPNPFKDGRPGKNWYLGFLKRHPTVSKRVVQNLPLSRNQITEGSIRGWFGRVHSYFEDNNLFEVFEDPKRIYNCDETAFFLCPKEKQVLVKKGSKRVYNRVANDEKECLTVLVTVSADGDIAPPMVLYPYKRDIPKNIKLSVPGWWGLGYTESGWMTMESFYEYITNVFYPWLCENEVTFPIVLFLDGHTSHISLPLSTFCKEKQIVLVALLPNATHVLQPLDVAVFRPVKGTWKDIVHDFRINNDYKRLKRTDFAKEVQKCFDRCLKAETIRNGFRCCGIFPFDPNNINYEKLLQQAKPPQENQLTTDDSTDQNNESQNTVSVDKNEWFKKQFESRLSPETLKKFKGADGHWTGDQTYEKLFLFWWNIASENRDHQANTSFELGNTTLTNNVDQNDISEVIFNLELGPDSVLSLCSIEDTRRHEEVIPTTDPKFILPPSQLFPRPENNSISMSAKIPSQNDEIIKSNTTADEFIEHLKRTEKEKDEKEMLKQKRKNEAVEKRKEKENIKRLKETQALQKNKESVYKQKTVPKKKGSPIEKPGSSQHVTPAKKGNKQSGELKTSLRRKCGSYDDCSDSNFSLSNKNSDKKQSKFFKKSVSPIADCSHQVTPAKKRGYKESSEQNTYLGKEVGSDDDSPNSNNQFSIVGKAKRICFFDTDSDDSVVTANELTEHQKLKEKDEKEMLKPNFEAVEKEKERLKETPQVLQSNKKSVNKQKTVSKKTFSPKAKPGSSQQVTPAKKGNKQSGELKTSVLGNVGSDDDSPNSINQLSIVDNAKRVCLFDTDSDDSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01248073;
90% Identity: -
80% Identity: -