Lcor015966.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992140.1:2429193-2431205[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-08 6.6e-06 26.4 0.0 1 42 15 56 15 59 0.89
Sequence Information
- Coding Sequence
- ATGGTGAACAAATATAAAACAAAAGGTAAACATGGGTCATGGGACGAGACTACGATGGCGCGAGCGATTAAAGATGTGCAAGAAAATCTGGGTTCTGTGAAATTTGTAGCCAATAAATATGGTCTCCCGCGCACTACTTTAAGGAGACATTTAAAAACAGGATGTTCAATCAAGAAACTTGGAAGATTTACTACAGTATTTACGTTGCAACAGGAAGAAGAGCTATTGGAATACGTGTTCCACTTGGATAGCCTGTTTTTTGGTATGACTATAGAAGATTTCCTACAGCTAGTGTTTCAATATGCAGAAGTAAATAACATTCCACATCCTTTCATGAAGGGAACAGCTGGGCACGATTTTTACAAAGGGTTCATTAAGCGACACCCTGACTTGACTTTACGACAACCAGAACCCACATCTATAGCCAGGGCCCGAGGCTTCAACAAACCTCAAGTATATAGGTTCTTTGACCTCCTTGAGGCTGAAATTGAGAAGCACCAAATCGATGCAACGCGTCTATATAATATGGATGAGACTGGTATCCAAACATCTTCCAACAAACCTCCTAAAGTTTTAACAAAAGTGGGTAAAAGGCAAGTGGGTCACATTGCTAGTACGGAGCGAGGAAGAACGACGACAGTCATTTGTTGTTGTAATGCTGCGGGATCCTTCGTACCACTTTTGATGATTTTTGCAAGGAAAAGAATAGCACCTAACCTTCTAGATGGAGCACCGCCGGGTACCCAAGCAACTGTTAGTGATAATGGGTGGACCAACGGTACAGTGTTCTTACAGTGGCTTCGTTTCTTTATAGATACAGTCCGTCCGACTGCAGAAAAAAAAGTTCTGCTCGTGATGGACAATCATGAGTCGCATAAATATTTACCTGCTCTAGAACTTGCGTCCAAGAATCATGTTATCTTTGTATCACTGGCACCACACACAACACATCGGATGCAGCCGCTAGATCTTTGCGTATATGGACCGTTAAAAACATATTTTGAACGTAGTGTAGCAACATTCCATAAGACTCACGTCGGTCGAATAATCAATCAGAAAGATGTAGCCAATTTGTTTGGGACTGCTTATTTACGAGCGGCCACAACTCAAAACGCTGTCAGTGGTTTCGAAAAAACAGGACTGTGGCCTCCAAATAGATTTGTTTTTGATGATGCCGATTTTTTACCGGCTACAACTATGGAAAACCCACCACAGCATCAACATACATTGCCAGATAATCAAGACCACTCCAGAACTCCGTCTCCTTCCATCATTGACCAATTGATAATGGACAGAAATTACTCTCAAGTGTTATCTTCTTCAGTTATTGAGCAATTTATGACCAATGACCTAGCTCCAAATACATTTTTCGCTGAAAATTTACAAGACTCACCCTCAGTGACTAAAAGACCAGATATAGTAATTCTGGATAACGTTTTACTCAATGCGCCTAACGAAATCACCCCTGATAATTTAAGCGAACCCACTCTGAATATAGATAAACCTATTACACCGCCTATAACGGGAACATCGTCGCCAATATCTAAATGCTACATAAGCCCTATAATTCTGAAACCATTGCCAAAAATGCCGCTAAATAAAACTGGTCGACGCAGGAGAGCACAGCGAGCTGAAATATTAACAAGCACCCCTATTAAAGAGGAACAAAGAATTAAACTGACCAAAAAACGTAAAGGGGATGCTGACAAAGCGAAAAGAGTGATGAAGTCCTTCAAGGAAAATTTGTCTGGGAAAGCAGGATCGTCGGGGATGCAAAGAGAAACAAAAACGCGTGGAAATACTGTGAAACAAAAAACTAATAATGACAGTAAGAAACATAAAACTACTACCAAACATCAAAATTACATTTGCCTAATTTGTATGGAGCCATATGAAGATCCGCCCATCGAAGACTGGATTCGCTGCGATGACTGCCAGTTGTGGGCTCATGAAGCCTGCACGACATACTCCGGCATTGGAGCGTATTTCTGTGACAATTGCCAAGAAATCTGA
- Protein Sequence
- MVNKYKTKGKHGSWDETTMARAIKDVQENLGSVKFVANKYGLPRTTLRRHLKTGCSIKKLGRFTTVFTLQQEEELLEYVFHLDSLFFGMTIEDFLQLVFQYAEVNNIPHPFMKGTAGHDFYKGFIKRHPDLTLRQPEPTSIARARGFNKPQVYRFFDLLEAEIEKHQIDATRLYNMDETGIQTSSNKPPKVLTKVGKRQVGHIASTERGRTTTVICCCNAAGSFVPLLMIFARKRIAPNLLDGAPPGTQATVSDNGWTNGTVFLQWLRFFIDTVRPTAEKKVLLVMDNHESHKYLPALELASKNHVIFVSLAPHTTHRMQPLDLCVYGPLKTYFERSVATFHKTHVGRIINQKDVANLFGTAYLRAATTQNAVSGFEKTGLWPPNRFVFDDADFLPATTMENPPQHQHTLPDNQDHSRTPSPSIIDQLIMDRNYSQVLSSSVIEQFMTNDLAPNTFFAENLQDSPSVTKRPDIVILDNVLLNAPNEITPDNLSEPTLNIDKPITPPITGTSSPISKCYISPIILKPLPKMPLNKTGRRRRAQRAEILTSTPIKEEQRIKLTKKRKGDADKAKRVMKSFKENLSGKAGSSGMQRETKTRGNTVKQKTNNDSKKHKTTTKHQNYICLICMEPYEDPPIEDWIRCDDCQLWAHEACTTYSGIGAYFCDNCQEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178451; iTF_01248051; iTF_01248052; iTF_00934677; iTF_01248053; iTF_01248054; iTF_01217431; iTF_01217432; iTF_00744555;
- 90% Identity
- iTF_01178451; iTF_01248051; iTF_01248052; iTF_00934677; iTF_01248053; iTF_01248054; iTF_01217431; iTF_01217432; iTF_00744555;
- 80% Identity
- -