Lcor010995.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- -
- Assembly
- GCA_905220515.1
- Location
- HG992137.1:3253087-3275573[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.6 2.5e+03 -1.1 0.0 2 21 127 146 126 149 0.83 2 7 4.6 2.5e+03 -1.1 0.0 2 21 170 189 169 192 0.83 3 7 4.6 2.5e+03 -1.1 0.0 2 21 213 232 212 235 0.83 4 7 3.1 1.7e+03 -0.6 0.0 2 22 256 276 255 282 0.80 5 7 4.4e-12 2.4e-09 37.4 0.1 1 39 295 333 295 336 0.94 6 7 3.2e-14 1.7e-11 44.2 0.3 2 45 351 394 350 394 0.96 7 7 1.4e-16 7.6e-14 51.8 0.0 2 40 402 441 401 443 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGATTTTAAACCGATTAAATGCGAGCCAACGACGGATGATGATATTAGCCAGGGTACCCTGGAAGAGCTAGCGCCTGCGCCGGCGGGGCCCGCCGCGACGCCGGTGGAGGAGCACCTCCCGTCACCGACGGAGGCGTCGCTGGCCACCCTTCAACCTGCACCCGTAGGAAATACGATGGGTAGTTCAATAATCGACATGCACGCGAAGATGATGAGCGTGACGGAAGTGGCCGACTCCGGGGACTTCGTGCCGCTCATGCCGGTCAAGGATGAGCTGTCCGAGAGTGAGCAGCAACAGAGCAGCGACGACACCAGCGACTCCGCCCCGGAGCAGGCGGTGGGCCGCGGGAGCCCCAAGGCGTGGTCGCCGCAGGACATGGACAGCGCGCTCGACGCGCTCCGGACACACAACATGACTCTCACTAAGAGCAGCGACGACACCAGCGACTCCGCCCCGGAGCAGGCGGTGGGCTGCGGGAGCCCCAAGGCGTGGTCGCCGCAGGACATGGACAGCGCACTCGACGCGCTCCGGACACACAACATGACTCTCACTAAGAGCAGCGACGACACCAGCGACTCCGCCCCGGAGCAGGCGGTGGGCCGCGGGAGCCCCAAGGCGTGGTCGCCGCAGGACATGGACAGCGCGCTCGACGCGCTCCGGACACACAACATGACTCTCACTAAGAGCAGCGACGACACCAGCGACTCCGCCCCGGAGCAGGCGGTGGGCCGCGGGAGCCCCAAGGCGTGGTCGCCGCAGGACATGGACAGCGCGCTCGACGCGCTCCGGACACACAACATGACTCTCACTAAGCGCGCGCACCGCCTCGGCATAGACACGCCGAAGAAAGATGGCGCCTCCAAATCCTGGAGCGAGGATGACCTGAAGGCGGCGTTGGACGCACTGCGCGCCGGCACCATCTCCGCTAACAAAGCTAGCAAAGCTTATGGCATCCCCAGCAGCACTCTGTACAAGATAGCGCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGGCGCGCCGACCTCGCGCGCGCGCTCGCTGCCGTGCGTGCGGGCGCCGCCGTACAACGTGCCGCGTCGCACTATGGTATACCCACAGGAACTCTATACGGACGGTGCAAGCGAGAGGGAATAGAGCTGTCTCGCTCTAACCCGACGCCGTGGTCGGAAGGCGCTATGGAGGAGGCGTTGGAAGCTGTTAGGGTGGGTCAGATGTCGATCAACCAGGCGGCCATCTACTTCAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGATCCAGCCGCCGCAGGGCATCCAACCTTCAAGTCACATGGAGTTCTCTGAACAAATGGATCATCAGTTCTCTCCCGACATGATATCCGGTTTGGATGACATACACCGGACATATACCCTGGCGGATGTCCTGGATGTACAGTCGCGCACACAAGAGTCAAACGACGAGTACACTGTACAGCCGCGAACAAAAGCGGAACATAGCGTATCGTATGTACAGTCGCGATCACCAGACTCATCTAAAAGGCAGGTCCATCAAGAGGTACAATCGAACACTGAGCTGCAATCTGCACACGCACCTGTACAATCACGACCACAAGCGGAGCTAGGACCGTATGTACAGACGCGAACACTCGATTCTATGGATATGCGACGAGACGTTCAAGAGTTTCAGTCAGAAGGGCGTCTACAAACTGCGCCTGTACATTCGCGACCACAAGTGCATTCACTAGTCAACTCGTACGTACAGTCGCGAACACTCGAATCCCTGGATAAGCGACAAGACTTACAGCGAGAGTTTAAGTCGAGTGAAGGGCGTCTACAAACTGCGCCTCTACAGTCGCGTCCACAAGTGCATTCACTGGTCAACTCGTACGTACAGTCGCGAACACTCGAATCCCTGGATAAGCGACAAGACTTACAGCGAGAGTTTCAGTCGAGTGAAGGGCGTCTACAAACTGCGCCTCTACAGTCGCGACCACAAGTTCATTCACTAGTACAGTCGCGAACTATTCAGTCCATTGATAAGCGACACGACGAGCAGGTACAGTCGGGCGCAGAAGTGCGGGCGTTTAGCGGCGTGCGTCAAGCTCTGTACGCGCTCGAGCCGTGCGGCCCCGCCTACTGCGTCGCCAGCTGA
- Protein Sequence
- MPGHDFKPIKCEPTTDDDISQGTLEELAPAPAGPAATPVEEHLPSPTEASLATLQPAPVGNTMGSSIIDMHAKMMSVTEVADSGDFVPLMPVKDELSESEQQQSSDDTSDSAPEQAVGRGSPKAWSPQDMDSALDALRTHNMTLTKSSDDTSDSAPEQAVGCGSPKAWSPQDMDSALDALRTHNMTLTKSSDDTSDSAPEQAVGRGSPKAWSPQDMDSALDALRTHNMTLTKSSDDTSDSAPEQAVGRGSPKAWSPQDMDSALDALRTHNMTLTKRAHRLGIDTPKKDGASKSWSEDDLKAALDALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAVRAGAAVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMEEALEAVRVGQMSINQAAIYFNLPYSSLYGRFKRCKIQPPQGIQPSSHMEFSEQMDHQFSPDMISGLDDIHRTYTLADVLDVQSRTQESNDEYTVQPRTKAEHSVSYVQSRSPDSSKRQVHQEVQSNTELQSAHAPVQSRPQAELGPYVQTRTLDSMDMRRDVQEFQSEGRLQTAPVHSRPQVHSLVNSYVQSRTLESLDKRQDLQREFKSSEGRLQTAPLQSRPQVHSLVNSYVQSRTLESLDKRQDLQREFQSSEGRLQTAPLQSRPQVHSLVQSRTIQSIDKRHDEQVQSGAEVRAFSGVRQALYALEPCGPAYCVAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -