Lbel012119.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995320.1:17255677-17272585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 1.1 10.5 0.3 1 23 369 391 369 391 0.95 2 13 0.00095 0.078 14.1 1.5 1 23 398 420 398 420 0.98 3 13 0.0087 0.72 11.1 0.5 1 23 424 446 424 446 0.98 4 13 0.66 54 5.2 0.7 1 15 451 463 451 471 0.72 5 13 0.59 49 5.3 0.8 1 20 476 493 476 496 0.71 6 13 0.59 49 5.3 0.8 1 20 501 518 501 521 0.71 7 13 0.27 22 6.4 0.3 1 14 526 539 526 540 0.88 8 13 1.7 1.4e+02 3.9 0.5 1 9 546 554 546 557 0.83 9 13 0.59 49 5.3 0.8 1 20 578 595 578 598 0.71 10 13 0.59 49 5.3 0.8 1 20 603 620 603 623 0.71 11 13 0.0054 0.44 11.8 4.2 1 23 628 651 628 651 0.98 12 13 0.19 15 6.9 0.3 1 12 655 666 655 671 0.88 13 13 0.062 5 8.4 0.1 2 20 676 694 676 696 0.93
Sequence Information
- Coding Sequence
- ATGAAGTGTTGTGTATCGTCCTGTGCCAACAATGGAAACTCCGCTCCACCTTCTGCCGATGTTGCATATTACAAAATACCAGAAGAGTTTTATTTGAGACAGTTATGGACCGAAGCTATTGGTACACCTGAGTGGGAGCTACGACCCGACAGTTCAGTATGCTCTGCACATTTTGGAAAATTTGACTTTGTAATGTCGGAGTCAGGAGACAAGGAGCTAACCTACGGTGCAGTGCCCAGCCTGCGTCTTAACACAGTTGAAGATCTGCAGGCAAAAGCCGAATTTAAAACCTGCAGAGTGTGCCTGGCCATGGACAGGAAGATGTTCAACATCAGGGACCACAACCTTCATCACCTGTACAAGATGATTGTCGGAGTCACGGTTCAGGCTAGAGACCGCCTGCCCCAGATGATGTGTTGGGAGTGCACCAGTAAATTATTGTCGTTAAAGAAATTCAAAGAGCAGGCACAAACATCACAATTACTGCTGTCGGATAAACTAGCTGTAGACAATATCCTCACTGTTGGTGATGTAAAATCCATAGACCGTATAAATTATAATTTGAAATCTAGCCTCACAGTGAAGCGCTATGAACCAAACGAGTTTGACTTTAATATAGCAGTGTTCGAATTGGACATGGAACGTATGGATATTAAATCTGAACGTGACCAGGGACCCACTTTGGAAATTGATGGATTGTCCTCCACATGTAACATCCCGAAATGCGCCAAAGTCGATCCGGAGTCCAAAAATCTGGTTAAGTTAATGATGTTAGATTTGAAACAGAACATTGATGTGATTGATACAAGCGGACCTCATATTAGTGATGAACTCCATAGCGATATATCACAGCAGGCCGAACATAATTATTGCAAGCCAGTCAATACAAAGCCGACTAGGCAGCGGGTGAAAAAAGTAGTCCCAGCAGCACAGAAAAAAAGACCAAAGAGAAATCTAGCTGTGCAAACGAATGCGGAAAGCGCGGCGAAAATTCCCCAAGTCTCGAGTCAGCTTACAAGTTTCGAAATCCGTCATCTGACGCCGGAGGAGCAGCAGGCGGCCATGGCGGCGCGCGCACGCTCCGCGGCCTACCTCACCGCGCCCTACAAGTGCGACATCTGCTACAAGCCTTTCCTGTCTGAGACCACGCTTGCCAAGCACGCCGTGCGGCACACTGAGATATGCGGCAACTACATGTGCTCGTTGTGCAAGCTACGGTTCCGGCTGAAGGATAAAATGCGTCGGCACATCGAAATCCACGTCACGAGGTACACCTGCAAAGTTTGCGGCCTGGTCGTGCAGCACAGTAGTACAGCAGAGCTTCACCAGAAGGAGCACGATGGCAACGTCTACAAGTGCCCGCACTGCCCCGTCACACTCCGTAGTACAGCAGTGAGACACCAGAAAGATCACGATGGCAACGTCTACAAGTGCCCGCACTGCCCCGTCACACTCCGCAGTACAGCAGTGCGTCACCAGAAGGAGCACGATGGCAACGTCTACAAGTGTCCGCACTGCCCCGTCACACTCCGCAGTACAGCAGTGCGTCACCAGAAGGAGCACGATGGCAACGTCTACAAGTGCCCGCACTGCCCCGTCACACTCCGACACCAGAAAGAGCACGATGGCAACGTCTACAAGTGCCCGCACTGCCCCGTCACACTCCGGTATGACGTATTCATTTGTAGTAGTACAGCAGAGCTTCACCAGAAGGAGCACGATGGCAACGTCTACAAGTGCCCGCACTGCCCCGTCACACTCCGCAGTACAGCAGTGCGTCACCAGAAGGAGCACGATGGCAACGTCTACAAGTGTCCGCACTGCCCCGTCACACTCCGCAGTACAGCAGTGCGTCACCAGAAGGAGCACGATGGCAACGTCTACAAGTGCCCGCACTGCCCCGTCACACTCCGCAAGCACACATCGTACATGTCGCACCTCCGGATAAAACACTCGTCGCGGTTCTCGTGCGAGCTCTGCGGCTACACCTTCGTCAGCGAGCGCGGCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACAGTAACCCGTAA
- Protein Sequence
- MKCCVSSCANNGNSAPPSADVAYYKIPEEFYLRQLWTEAIGTPEWELRPDSSVCSAHFGKFDFVMSESGDKELTYGAVPSLRLNTVEDLQAKAEFKTCRVCLAMDRKMFNIRDHNLHHLYKMIVGVTVQARDRLPQMMCWECTSKLLSLKKFKEQAQTSQLLLSDKLAVDNILTVGDVKSIDRINYNLKSSLTVKRYEPNEFDFNIAVFELDMERMDIKSERDQGPTLEIDGLSSTCNIPKCAKVDPESKNLVKLMMLDLKQNIDVIDTSGPHISDELHSDISQQAEHNYCKPVNTKPTRQRVKKVVPAAQKKRPKRNLAVQTNAESAAKIPQVSSQLTSFEIRHLTPEEQQAAMAARARSAAYLTAPYKCDICYKPFLSETTLAKHAVRHTEICGNYMCSLCKLRFRLKDKMRRHIEIHVTRYTCKVCGLVVQHSSTAELHQKEHDGNVYKCPHCPVTLRSTAVRHQKDHDGNVYKCPHCPVTLRSTAVRHQKEHDGNVYKCPHCPVTLRSTAVRHQKEHDGNVYKCPHCPVTLRHQKEHDGNVYKCPHCPVTLRYDVFICSSTAELHQKEHDGNVYKCPHCPVTLRSTAVRHQKEHDGNVYKCPHCPVTLRSTAVRHQKEHDGNVYKCPHCPVTLRKHTSYMSHLRIKHSSRFSCELCGYTFVSERGVKLEGPYCEECKLRFASDEAYQRHLTQSSVHSSDSNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00933840;
- 90% Identity
- iTF_00933840;
- 80% Identity
- iTF_00933840;