Lbel017918.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995345.1:9176983-9186966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.14 11 7.3 1.5 1 19 509 527 509 533 0.89 2 11 0.00093 0.076 14.2 4.4 1 23 547 570 547 570 0.97 3 11 0.0091 0.75 11.0 0.1 1 22 575 596 575 599 0.88 4 11 0.0033 0.27 12.4 0.1 2 21 651 670 650 671 0.96 5 11 0.0025 0.21 12.8 2.0 1 23 726 747 726 747 0.98 6 11 1.1e-05 0.00093 20.2 0.3 1 23 753 776 753 776 0.97 7 11 0.44 36 5.8 0.1 1 19 795 813 795 816 0.88 8 11 0.18 15 7.0 0.0 2 23 828 851 828 851 0.94 9 11 0.0011 0.088 14.0 3.9 1 23 857 879 857 879 0.98 10 11 0.00026 0.021 15.9 0.6 1 20 885 904 885 906 0.94 11 11 1.1 87 4.5 0.5 1 23 916 939 916 939 0.92
Sequence Information
- Coding Sequence
- ATGCTGTCCCCGCACGATGACGACGAGGAGGACGACGACAGCCACCTGTGCATCAAATGTAACACCACAATAGTCGGGCTAGACAACTACGTCCGACATAGGAAGCAACGATGCGGCAAAGACAAAAATCCCCCGAAATCCGTTCTACCTATCGACGCTTTGGAGCCTACGTATGGCCTCGGTGCTGACTTCTTCTTCCAATCCTTGGAACTGCAGAGTAGCGTTAAAAAGTCGTCTCTATCCCGCCTCACACCTCCCACCTCTATATCTAAATCTGCAATTGATAACTCTAGCTCCTTACAAGTTGCGACAACTTCGCGGGATATACCCCGCATGAGTCTTTTAGAGGTAAACTTGAGAGGCGAAGATTGGATCGGTGGTCATAGTCTGAAAATTGGAGGAAACGAAGACAATCAAACTAAACTTATCAAAGCAGTGGCTAGCATAAGCGGCGCTGTGAAGAAAGACATACAATCCCATTCCTATAACATAGGTCCATTCAACGATTTTAAGCCAGATGACGATTCCGACGATCTTGAAGATTTGGAAGACGACGAAGATGATGACCAAGGATCGAAGTGGAAGCCTCCGTCGACGTACACCGGTGGCAAATGGAGGCCGTACTCACCAGAGAACGAGGAATGGGACGTTAGGGAGGAACAGGAACACACTGGAGGTAAATGGAAACCGCCCTGTACACCTGACGCGCAGGAGCGAGACGAAGATTATGATGCTCCGCCACCGGGACACACCAAAGGAAAATGGCTGCCCGGAGCTAATGAAAAAACTCAAATCATGCAAACCACAATACAGAACAGAGGCTCAGTGCAGTACTGGTGTGGACCCTGCAACAGAAGACTAGGCTCGAGGGCTATTTACGAGAAACATTTAAAATCTAATCTGCACAGACGTAAAGTTCTACCTGAACATGACTTGGAGTTCTCGGGACATATCAGACCGATCAGTGACTCCATCAACAAGAGGGTGTCGCGTCCGTCTCGGTACCTTAATGAATCTATTTATTTGCAGCCCACGAAGAAAGCGCCGGAGCTAAAGTCTACAAACCAAAACTCATCAAAATTAAAAATTAAAATGAAGAAAAAGAAACGGAGAAGAAATCCCATGTACGTAAACTGCTCGGGCTGCAACTCCAGGGTACGAACGCACTTGATGGGCAAACATTTGATCTCGCACTATCATTTCCGGAAAGTCAGTGACACCAAAAGCGATGTCTACCGGCAGCTGATCCTCGACAACATGGATGCAATCGTCCACCAGTCGCCTTTTCAATGCAGCCCTTGCAAGTTCTACACCAACTGGCTCTCTAATTTCATCCAGCACTTCTATTCGGACGAGCACACGCAGACCGTCACCGCCATGGAAGGCAGGTACTGGTGTTCCTTTTGCAAATTCGAATGCGATCTGTCTGATCTGATGCTGAACCACCTGACCAGCTCGGAGCACGGGGACGTGGTCGCCGCCATCAATAGATCGATGCCGATCATCATCCGCAAGAAGACGATATTCCAGTGCGAAACCTGCGGGGAAGAGTTCAGATACAACATAGCGGCGAAGCAGCACTGCCTCAGAACCAACCACAGAATGCTGCACACCGCGGCTGATGATTATCAGCAGCTTCACCAGTGTGCACATTGCGAGCAAAAGTTCAAGTCCTCCCGCACGTTGGCCGCCCACTTAAAATCCAAGCATAAACAGAAAGCCTACCTGTGCCTGGTCTGTTCGAAGTCCTTCGACAGTGCCGACGAAGTGAAGGCCCATAGAGAGAGCTCCGAGCATAGAGTATTAGCTCGCAAACAGAGACTACACAAGATGGGTCTGCCAGCTACAGAACTGCGGAAAAAGTGTCCGTACTGCACTGAAACCGTGATGCTGCCTACAGTCCTAGAACTCAAAGATCACATCCGAGAAGTACATCCCAATATTAAAAAGAAGTGTCCGCACTGTGGAGCATCGTTCATCTTACCCCAGGAAGTGTCGCGACACATCCGAGACGGCGCCTGCAGCAAATCCGAGGTGTCCGGAGCCGGGGCACTCTGGAGCTGCAACCAGTGTCCCTACACTACCGACTCCCAGGCGGAGTGCGTCTTCCATGAGACCCTGCACTCAGACCCCGTGTCCATCGAGAGGGGTCCATCGAATACCGTCATCAAGAAGTATAAATGCTCCTTCTGCGAACGAATCTTCAAGAAAGCTTCCCTTCGTGATCATTTAAGACAGCATACCTCCGAGAGGCCCTACGCCTGTTCCATTTGTGGCGCCAACTTCACCAGACAGTCGAGCCTGGCTTATCATTCGCGGACCGAGCACAGCGCGCCGAAACTGCAGTTCGAGGATGTACGAGGGATGGAGGATGGACGGGAGTTTAGATGTCAGAGGTGCAGTCGAAGATTCGTTAATGGGCTTGCGCTGTCCCAGCACGCCGCGCGGTGTGCGTGTGAGGAGGGGTGCGAGGGGGGCCGGCGGTGCACATACGATGGCTGCACTTATGTGGCTGTTTCGTATGTTCAACTTGCCAGACACATTGCAACACATGAGGATCGCAAAAAGTATAAATGCTTATTGTGTAACTTCAGAACGAAACAAGCCACCCATCTCAAAAGACACATGGTCAGCCACGAAGGCTCTAAACCGTACGCTTGTCCATATTGTGAATTCAGCTGTGCCACTCAGGAGAATCTCCGAAAACACGTGCTCAACACGTCTCGTCACCGCGGCTGCAATCTGTACAGATGTCGCCACTGTGACTTCGGCGTGGACCTGGCTAATGCTTTCCGTCTGCACCTCCTCAACGTCCATCCCCTTGAATACGATGCTCAAACGGCTCTTAAGACTGTTGAGAAATATCACCTGAAAAGAAATGATTAA
- Protein Sequence
- MLSPHDDDEEDDDSHLCIKCNTTIVGLDNYVRHRKQRCGKDKNPPKSVLPIDALEPTYGLGADFFFQSLELQSSVKKSSLSRLTPPTSISKSAIDNSSSLQVATTSRDIPRMSLLEVNLRGEDWIGGHSLKIGGNEDNQTKLIKAVASISGAVKKDIQSHSYNIGPFNDFKPDDDSDDLEDLEDDEDDDQGSKWKPPSTYTGGKWRPYSPENEEWDVREEQEHTGGKWKPPCTPDAQERDEDYDAPPPGHTKGKWLPGANEKTQIMQTTIQNRGSVQYWCGPCNRRLGSRAIYEKHLKSNLHRRKVLPEHDLEFSGHIRPISDSINKRVSRPSRYLNESIYLQPTKKAPELKSTNQNSSKLKIKMKKKKRRRNPMYVNCSGCNSRVRTHLMGKHLISHYHFRKVSDTKSDVYRQLILDNMDAIVHQSPFQCSPCKFYTNWLSNFIQHFYSDEHTQTVTAMEGRYWCSFCKFECDLSDLMLNHLTSSEHGDVVAAINRSMPIIIRKKTIFQCETCGEEFRYNIAAKQHCLRTNHRMLHTAADDYQQLHQCAHCEQKFKSSRTLAAHLKSKHKQKAYLCLVCSKSFDSADEVKAHRESSEHRVLARKQRLHKMGLPATELRKKCPYCTETVMLPTVLELKDHIREVHPNIKKKCPHCGASFILPQEVSRHIRDGACSKSEVSGAGALWSCNQCPYTTDSQAECVFHETLHSDPVSIERGPSNTVIKKYKCSFCERIFKKASLRDHLRQHTSERPYACSICGANFTRQSSLAYHSRTEHSAPKLQFEDVRGMEDGREFRCQRCSRRFVNGLALSQHAARCACEEGCEGGRRCTYDGCTYVAVSYVQLARHIATHEDRKKYKCLLCNFRTKQATHLKRHMVSHEGSKPYACPYCEFSCATQENLRKHVLNTSRHRGCNLYRCRHCDFGVDLANAFRLHLLNVHPLEYDAQTALKTVEKYHLKRND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935235;
- 90% Identity
- iTF_01217919;
- 80% Identity
- -