Lbel012116.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995320.1:17188113-17228491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 16 6.9 0.3 1 23 534 556 534 556 0.92 2 12 0.46 38 5.7 3.3 1 23 563 586 563 586 0.97 3 12 0.85 70 4.8 1.4 1 23 590 612 590 612 0.97 4 12 0.0015 0.12 13.5 4.7 1 23 618 641 618 641 0.97 5 12 0.025 2 9.7 0.8 1 23 645 668 645 668 0.96 6 12 0.085 6.9 8.0 0.1 2 20 680 698 680 700 0.93 7 12 8.1 6.7e+02 1.8 0.1 3 20 710 727 709 729 0.91 8 12 3.2 2.6e+02 3.0 0.1 2 23 769 791 768 791 0.89 9 12 2e-05 0.0017 19.4 0.4 1 23 803 825 803 825 0.98 10 12 0.00031 0.025 15.7 2.1 1 23 831 853 831 853 0.97 11 12 0.0003 0.024 15.7 0.7 1 23 861 884 861 884 0.98 12 12 0.0028 0.23 12.6 0.7 1 23 890 913 890 914 0.93
Sequence Information
- Coding Sequence
- ATGTCAACTTTCAACTGTACTAAGGGTGATTTCATCATTCCCTATATCGAGCATGGCAGAACCTTGGAATCGTTGTCCATAGTTCTACAGCAAACATTAAATATATATACAAAAAACAACTTGTGTTTTGTAATTGGTGACATTCAAAGACATATTCTGCCTTCTTTCAATAAGCGCTGGGCTAAAGCATCACGGAAAAAGGACCAATTTATTCTGAATAATACAAGCTGGCTGGAGTCAGGATATTCGGTACAGTTTCCGGAGTCTGAAGCACATTTACTGCCATCAACTTCTGGTGAACAAGGAAGACCGTGCATTGCTTATGGAGACTCCTCAGAATCAACAAAGAAAAGGAAAAACACTCTTTTACTAGAAGAATATGGGTTTGAGCACATTTGTAACGCATTTTTGCAAGGACTGCGGGCCTTAGGTGAGTATGCAGAGGCTCGTCTTGTTGAAGAGCTAAGAAACTCTGAGAGCGAAAAGAAAAAAGTTTTCTCGACTACGTGGAAAGAGTCAAACCAAGTGAAGATTTTATCTGATACAGAAGCATTGAGTGCTTTTATTGATTTGGATCTAACTAAAGCACAATATATAATACCAGAAGAGTTTGATTTGAGACAGTTATGGACCGAAGCTATTGGTACACCTGAGTGGGAGCTACGACCCGACAGTTCAGTATGCTCTGCACACTTTGGAAAATTTGACTTTGTAATGTCGGAGACAGGAGACAAGGAGCTAACCTACGGTGCAGTGCCCAGACTGTGTCTTACCTGCAGAGTGTGCCTGGCCATGGACAGGAAGATGTTCAACATCAGGGACCACAACCTTCATCACCTGTACAACATGATTGTCGGAGTCACGGTTCAGGCTAGAGACGGCCTGCCCCAGATGATGTGTTGGGAGTGCACCAGTAAACTATTGTCGTTAAAGAAATTCAAAGAGCAGGCACAAACATCTCAATCACTGCTGTCGGATAAACTAGCTGTAGACAATATCCTCACTGTTGGTGATATAAAATCCATAGACCGTATAAATTATAATTTGAAATCTAGCCTCGCAATAAAGCACTATAAATATAACATAGAAGCGTTTGACAGTCAATGTCACACACACATGGAGTTACTACTGGATATTAAGTCTGAACGTGACCAGGGAGAGGGACACACATTGGAAAGTGATGGATTGTCCCCCACATGTAAGATCCCGAAATGCGCCAAAGTCGAGCCGGAGTCCAATAATCTGGTTAAGTTGGAGTTAGAGTTAGATTTGAAACAGAACATCGATGTGATTGATACGAGCCAACCTGATATTAGTGATGAACCCCATAGCGATATATCACAGCAGGCCGAACATAGTGATAGCAAGCCAGTCAACACTAAACCGACTAGGCAGCGGGTAAAAAAAGTAGTCCCAGCGGCACAGAGACAAAGACCAAAGAGAGATCTAAATGTGCAAAAAAATGGGAACAGTGCGGCGAAAGTTAACCCATTCGCGAAGATGGAGCTCCCCTGTTTCGAAATCCGCGACCTGACGCCGGAGGAGCAGCAGGCGGCCATGGCGGCGCGTGCGCGCTCCGCGGCCTACCTCACCGCGCCCTACAAGTGCGACCTCTGCTACAAGGCTTTCCTGTCTGAGAGGACGCTCGCCATGCACGCCGTGCGACACACCGAGACATTCGGGCCGTACAGTTGCGCGTTGTGCAAGCACCGGTTCCGGTGGGAGCGTCAAATGCGCGACCACATCAAGACGAAGCACGCCAGCAAGTACACATGCAGGTCCTGCGGCATGGTCACACAGCACAGGAAGGCAGCCGTTACTCACCAGAAGGAGCACAATGGCACCAACATCTATCAGTGCTCGCACTGCCCCGTCACATTCCACAAGCAGACGTCGTTGTTGTCGCACCTGCGGCTCAAGCACTCGTCGCAGTTCGCGTGCGAGCTGTGTGGCTACACGTTCCTCAACCAGCGTGGCGTCAACAGTCACAAGCGCAAGAGCCACGTCCTGGACGCCCAGGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGTGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACAGTAACCCGAACCGCGTCCGCAATGAGTTACATGCTACGTATAAGGTGCAGCAGCGGAAGGGGGTAAAGCAGCAGCTTGAGGGCGGCAAACCGATACCTTGCGAGAAGTGCGGCGAGCAGCAGGCCAGCTACAGGGAGTACGCGCGACACTTCCGCGCGGCGCACCCCGGCCTCGTCCGCACCAAGTTCAGCGGCAAGTACATGTGCGAGCAGTGCGGCAGGAGGTTTCAGAGCGCGGCGCTGCTCCGGGACCACATGACGCGTCACGAGGGCGTGAAGCGGCACCGGTGCGACGTCTGCGACAAGGCGTATACCTACAAGGTCCTACTGGACAAGCACCGACTGAAGCACGGGTCGCAGCCGCCGCCGACGTACCCCTGCCCGCACTGCGAGCGCACCTTTACGGCCTACGCGAACCGCGCCCGTCACGTGAAGACGGTGCACGAGCGCTCGATACGATTCGAGTGTGAGATCTGTGGAAAGACGCTCACGACGATGGCGGGCATGCGCGATCACATCGACCACGTGCATCACAAGAAGCCGTGGCCCAAGCGCGTGCGTGCGCCCCGCTCGCGCTCGCGACCGTCCTCCGATGGAGAGTGA
- Protein Sequence
- MSTFNCTKGDFIIPYIEHGRTLESLSIVLQQTLNIYTKNNLCFVIGDIQRHILPSFNKRWAKASRKKDQFILNNTSWLESGYSVQFPESEAHLLPSTSGEQGRPCIAYGDSSESTKKRKNTLLLEEYGFEHICNAFLQGLRALGEYAEARLVEELRNSESEKKKVFSTTWKESNQVKILSDTEALSAFIDLDLTKAQYIIPEEFDLRQLWTEAIGTPEWELRPDSSVCSAHFGKFDFVMSETGDKELTYGAVPRLCLTCRVCLAMDRKMFNIRDHNLHHLYNMIVGVTVQARDGLPQMMCWECTSKLLSLKKFKEQAQTSQSLLSDKLAVDNILTVGDIKSIDRINYNLKSSLAIKHYKYNIEAFDSQCHTHMELLLDIKSERDQGEGHTLESDGLSPTCKIPKCAKVEPESNNLVKLELELDLKQNIDVIDTSQPDISDEPHSDISQQAEHSDSKPVNTKPTRQRVKKVVPAAQRQRPKRDLNVQKNGNSAAKVNPFAKMELPCFEIRDLTPEEQQAAMAARARSAAYLTAPYKCDLCYKAFLSERTLAMHAVRHTETFGPYSCALCKHRFRWERQMRDHIKTKHASKYTCRSCGMVTQHRKAAVTHQKEHNGTNIYQCSHCPVTFHKQTSLLSHLRLKHSSQFACELCGYTFLNQRGVNSHKRKSHVLDAQVKLEGPYCEECKLRFASDEAYQRHLTQSSVKLEGPYCEECKLWFASDEAYQRHLTQSSVHSSDSNPNRVRNELHATYKVQQRKGVKQQLEGGKPIPCEKCGEQQASYREYARHFRAAHPGLVRTKFSGKYMCEQCGRRFQSAALLRDHMTRHEGVKRHRCDVCDKAYTYKVLLDKHRLKHGSQPPPTYPCPHCERTFTAYANRARHVKTVHERSIRFECEICGKTLTTMAGMRDHIDHVHHKKPWPKRVRAPRSRSRPSSDGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -