Basic Information

Insect: Lysandra bellargus
Gene Symbol: -
Assembly: GCA_905333045.1
Location: HG995320.1:17008823-17027281[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00078 0.064 14.4 0.7 1 23 331 353 331 353 0.97

2 10 0.48 39 5.6 0.3 1 23 360 383 360 383 0.84

3 10 0.0018 0.15 13.3 2.8 1 23 414 437 414 437 0.98

4 10 0.19 15 6.9 0.2 1 12 441 452 441 457 0.88

5 10 0.065 5.3 8.4 0.1 2 20 464 482 464 484 0.93

6 10 0.065 5.3 8.4 0.1 2 20 507 525 507 527 0.93

7 10 0.00014 0.011 16.7 1.2 2 23 609 630 608 630 0.96

8 10 1.4e-07 1.2e-05 26.1 1.3 1 23 636 658 636 658 0.98

9 10 0.22 18 6.7 7.9 1 23 665 688 665 688 0.97

10 10 0.00028 0.023 15.8 0.2 1 23 694 717 694 717 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00078	0.064	14.4	0.7	1	23	331	353	331	353	0.97
2	10	0.48	39	5.6	0.3	1	23	360	383	360	383	0.84
3	10	0.0018	0.15	13.3	2.8	1	23	414	437	414	437	0.98
4	10	0.19	15	6.9	0.2	1	12	441	452	441	457	0.88
5	10	0.065	5.3	8.4	0.1	2	20	464	482	464	484	0.93
6	10	0.065	5.3	8.4	0.1	2	20	507	525	507	527	0.93
7	10	0.00014	0.011	16.7	1.2	2	23	609	630	608	630	0.96
8	10	1.4e-07	1.2e-05	26.1	1.3	1	23	636	658	636	658	0.98
9	10	0.22	18	6.7	7.9	1	23	665	688	665	688	0.97
10	10	0.00028	0.023	15.8	0.2	1	23	694	717	694	717	0.91

Sequence Information

Coding Sequence: ATGAGCTGTTGCGTTCTATACTGTGTCAACAATGAGAATTCGGGGCCTCCAAACGATGATGTTATTTTTTACAGAATACCAAAAGAGTATCATTTGAAACAGTTCTGGACAGAAGCTATTGGTAGACCTGAGTGGGAGCTACGGCCTAACAGTGTAGTATGTTCGGCACATTTTGAAGAGTTTGACTTTACCATCTCAGAAACGGGAGAAAAGTTGCTTGTGGATGGTGCGGTTCCCAGCCTGTGTCTTACCTGCAGAGTGTGCCTGGGCATGGACCGGAGGATGTACCATATCAAAGACTACAACTTACATCATACTTATGAGATGATTGTTGGAGTTATGGTGGAGGCTAGGGACCGTCTACCTCAGATGCTTTGTTGGGAATGTGCCAGTAAACTGATCTCATACAAAACATTCAAAGAAAAAGCTCAGAAAACACAACAGCTTCTATCAGATAAGCTCGCAGCTGACGTGTGTGATATTCTAACTGTTGGCCATATAAAGTCTATAAATCGAATTAAATTTAATTTAAAATCTCATTTAACGGTCAAATTTACCGAGCCGGATGAATTCGATGTGAACATCGACCATGACCAAGTGGTTCTGCTGCCGGAGATCAAGATCGAAGACAAGATCAAGTCTGAGGAAGGTCAGGAGGCCGAATGCAACGTAGACTTGAAACTGGAGGACGATGATGTGAAGGATGAGTTGAACCACAGCAGTGGTACTGACAGTGACGACATGAAGCTCAGTGAGAGGAGGACAAGACTAGTAAGGAAAAGAAAGTTGCAGAAAGCAGCAGCCAGGAAAAGATCAAAGAAGGTGGTGAAAGAGAAAAACAATGATGGGGCGAAGGACCGTTTTAGATTCCAGCGGTCGGCGGAGCGGGCGGTGGAGCTCCCCACCTTCGAGGTCCGTCGACTGACGCTGGAGGAGCAGCAAGCGGCGGTGGCGGCGCGGGCGCGCTCCTCCGCGTACATCGACGCGCCCTACAAGTGTGAGGTCTGCTACCGCGGGTTCAGGTCGCAGGACACCTTCGCCCTGCACGGCCTGAGACACAGCGAGAAGTGCGGCAAGTTCGAGTGCGTGGTGTGCAAGCGGCGGTTCCGGCTGGGGCGTGACGTGCGACTGCACGCGGCGCGCAACCACGCCGACCAGTTCGCCTGCAAGGCCTGCTCCTTCGTCACGCAGTGCAGGAGGACAGCAGTGGACCATCAGAAGTGGCACGCCGGCAACACCTACCAGTGCCCGCACTGCCCCACCACACTCACCAAGTTCACATCGTACATGTCGCACCTGCGCGTGAAGCACTCGTCGCGGTTCTCTTGCGAGCTGTGCGGGTACACGTTCGTCAGCGAGCGCGGCGTGCAGGTGAAACTAGAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACAGTAACCCTCCTCCGTACACAGCAGCGACAGTAACCCAAGGTCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAGCGACGAGGCCTATCAGCGCCATCTCACGCAGTCCTCCGTACACAGCAGCGACGACGACCCGAATCGTATCCGCAACGAGAAGAACTATCCCCCGCAATCGGTGAAGCGACACAGTGGCACGGGCGGCGCGCGACGCGAGCGGGACCCACCACAAGAAATACCCTGCGAACAGTGCGGCGAGCTGCAGGAGAGCTACCTGGCGTACGCGCGTCACTTCCGCGCGGCGCACCCCGGCCTCATCCGCACCAAGTTCCCGCGCGCCACCGGCAACTGCATGTGCGAGCAGTGCGGCAGGATGTTCGCGACCAAAACGCTGCTCCTGGACCACACGGCGACTCACACGGGCGAGAAGCGGTTCAAGTGCGACTCGTGCGACAAGGCGTTCACGAACAAGAAGAACCTGCGAGCGCACCAGAACGTGCACGGCGTACAGGTTTCCACGCACCGCTGCCCGTACTGCGAGCGCGAGTTCTTCCACTACCAGAACTGCAACCGCCACGTGAAGACCGTGCACAAGGGCGTGAAGCAGTTCCAGTGCGAGATCTGCGGCAAGGAGTTCACGTCGGCAGCCGGCCAGCGCGCGCACGTCGACCACGTGCACCACAAGAAGCCCCGCCCCAAACGCGTGCGCGCACGTGCTCCGACCGCCCCGCCCACCGCTTACCGCGACTAA
Protein Sequence: MSCCVLYCVNNENSGPPNDDVIFYRIPKEYHLKQFWTEAIGRPEWELRPNSVVCSAHFEEFDFTISETGEKLLVDGAVPSLCLTCRVCLGMDRRMYHIKDYNLHHTYEMIVGVMVEARDRLPQMLCWECASKLISYKTFKEKAQKTQQLLSDKLAADVCDILTVGHIKSINRIKFNLKSHLTVKFTEPDEFDVNIDHDQVVLLPEIKIEDKIKSEEGQEAECNVDLKLEDDDVKDELNHSSGTDSDDMKLSERRTRLVRKRKLQKAAARKRSKKVVKEKNNDGAKDRFRFQRSAERAVELPTFEVRRLTLEEQQAAVAARARSSAYIDAPYKCEVCYRGFRSQDTFALHGLRHSEKCGKFECVVCKRRFRLGRDVRLHAARNHADQFACKACSFVTQCRRTAVDHQKWHAGNTYQCPHCPTTLTKFTSYMSHLRVKHSSRFSCELCGYTFVSERGVQVKLEGPYCEECKLRFASDEAYQRHLTQSSVHSSDSNPPPYTAATVTQGPYCEECKLRFASDEAYQRHLTQSSVHSSDDDPNRIRNEKNYPPQSVKRHSGTGGARRERDPPQEIPCEQCGELQESYLAYARHFRAAHPGLIRTKFPRATGNCMCEQCGRMFATKTLLLDHTATHTGEKRFKCDSCDKAFTNKKNLRAHQNVHGVQVSTHRCPYCEREFFHYQNCNRHVKTVHKGVKQFQCEICGKEFTSAAGQRAHVDHVHHKKPRPKRVRARAPTAPPTAYRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01217823;
90% Identity: iTF_00933835;
80% Identity: iTF_00933835;