Basic Information

Insect: Lysandra bellargus
Gene Symbol: salm
Assembly: GCA_905333045.1
Location: HG995320.1:17338746-17352263[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00075 0.062 14.4 0.2 1 23 352 374 352 374 0.96

2 10 0.00017 0.014 16.5 3.2 1 23 381 404 381 404 0.96

3 10 0.0098 0.81 10.9 2.3 1 23 435 458 435 458 0.98

4 10 0.0043 0.35 12.1 0.3 1 23 462 485 462 485 0.93

5 10 0.15 13 7.2 0.1 2 20 498 516 498 518 0.93

6 10 1.3 1.1e+02 4.2 0.1 2 23 571 593 570 593 0.94

7 10 0.0033 0.27 12.4 2.5 2 23 609 630 608 630 0.96

8 10 6.6e-08 5.4e-06 27.2 0.7 1 23 636 658 636 658 0.99

9 10 0.24 20 6.6 6.8 1 23 665 688 665 688 0.98

10 10 0.00028 0.023 15.8 0.2 1 23 694 717 694 717 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00075	0.062	14.4	0.2	1	23	352	374	352	374	0.96
2	10	0.00017	0.014	16.5	3.2	1	23	381	404	381	404	0.96
3	10	0.0098	0.81	10.9	2.3	1	23	435	458	435	458	0.98
4	10	0.0043	0.35	12.1	0.3	1	23	462	485	462	485	0.93
5	10	0.15	13	7.2	0.1	2	20	498	516	498	518	0.93
6	10	1.3	1.1e+02	4.2	0.1	2	23	571	593	570	593	0.94
7	10	0.0033	0.27	12.4	2.5	2	23	609	630	608	630	0.96
8	10	6.6e-08	5.4e-06	27.2	0.7	1	23	636	658	636	658	0.99
9	10	0.24	20	6.6	6.8	1	23	665	688	665	688	0.98
10	10	0.00028	0.023	15.8	0.2	1	23	694	717	694	717	0.91

Sequence Information

Coding Sequence: ATGAGTTGTTGTATATTGACCTGTGTGAACAGTGAAGCATCCAGTGCACCATATGAAGATGTTACCTTTTACAAAATACCCACCGAGTATCACTTGAAGCAGCTATGGACTGAAGCCATTGGCATACCAGAGTGGCAGCTACGGCCTAATAGTGAAGTATGTTCTGCTCATTTCGGAGAGCTTGACTTCACAATCTCAGAAACTGGAGAAAAGATTCTTTTGGAAGGTGCTGTCCCCAGTCTATGTCTTAACACCCCAGATGACTTGCAATCAATAGCTGATTTTAGAACCTGCAGAGTGTGCCTGGGCATGGACCGAAGGATGTACCACATCAGGGACAACAACTTACATCATGCTTATGAGATGCTTGTTGGGATCATGGTAGAGACTGTTGATCGGCTGCCCAAGATGTTGTGCTGGGAGTGCACCAGCAAGTTAAACTCAATAAAAACATTTAAGGAGAAGGCACTTAGGACACATTTACTTCTATCTGAAAGGCTAGCCATAAACAATATACTAACAGTCAGTGATATAAAATCTATAAACAGAATTAATTTTAATTTGAATTCACATCTTACGCTGAAATACAACGAGCCAGATTCCTATGATGTGCACATAGATCACGATCAATTGGGCATACTGCAGGAGATTAAAATAGAGTGCAGTAAGTTGACAGAGGAACCCAAGCATGAGGTAGAGGATGTGGACTTCAAGCTAGAAGACGGTGTGAAGGATGAGGTGAATCACAGTTTCAGTGACAGTGACGACATAGAACTCAGTGAGTTGAGGACTAAAAAAGTAAGAAAGCGCAAGGGAAAAGTGAAAAAGGAAGCGACAGAGCCGAAGAGGAAAAAGCGGGTGAAGAAAGAAGAGGTAAAGGAGAAGGTAGAGGATGAGGATGAATTAGAAAAATTCCAGCGCGGGACGGTGAAGCGGCGCGTGCGCAGCTACGACATCAGCGACAGCCACTTCGACACGCGGCCGCTCACGCTGGAGGAGCAGCTGGCGGAGCTGCAGGCGCGCGCGCACTCCGCCTCCTACCTCGCCGCGCTGTACAAGTGCGATGTGTGCTACAAGGGGTTCAAGTCCGCCGACACTCTTGGACTCCACGTGGTGCGGCATAGCGAGAAGTACGGCGAGTTCGAGTGTTTCATCTGCAAACGGCGGTTCAAGAACGCGCGGCACCTGCGCCTGCACGTGTCCAGCCTCCACACCGAGCAGTTCAGCTGCAAGGCCTGCGACTTCGTCACGAGATGCCGAGGCATAGCGATTGACCACCAGAAGTGGCACTCGGGCAATACATACGAGTGTCCGCACTGTCCGTCCAAATTCGGCAAATTCACGTCGTACATGTCGCATTTACGGATCAAGCATTCGTCGCGATTTGCGTGCGAGCTCTGCGGATACACGTTCGTCAGCAAACGCGGCGTCGAAATGCACAAGGCCAAACGACACAAACTGCAGGACGCACAGATGAAGCTGGATGGCCCGTACTGCGAGGAGTGCAAGCTGCGGTTCGCCAACGACGAGGCGTACCTGCGGCATCTCACGCAGTCCTCCGTACACAGCAGCGACAATGACCCCAACCGCATCCGCAACGACTGGGGCTGCAAGGAGCAGCTGGGCGTGGTGCGGCGCACGCGCAAGCGGCGCGCGCCCGGCGTCGTCACGCACTGGGTCGAGAACACCGACAGGCCCAAGCAGAACATACCGTGCGAACAGTGCGGCGAGCAAATGGACAGCTACCGGTCGTACGCGCAACACTTCCGCATGGCGCACCCCGGCCTCAACCGCACCAAGTTCTCGCGCGTCACCGGCGCCTGCATGTGCGAACAGTGCGGCAAGATGTTCGCGTGTAAGGCGCTCCTGCTCGACCACATGATGTCGCACTCCGGCGAGAAGCGGTTTAAGTGCGAGACGTGCGACAAGGCGTTCACGAACAAGAACAACCTGGCTGTGCACCAACGCGTCCACGGCGCGCAGGTCCCCACCTACCGCTGCCCGTACTGCGAGCGACAGTTCCACTTCTACCAGAACTGCAACCGCCACGTGAAGACCGTGCACAAGGGCGTGAAGCAGTTCCAGTGCGAGATTTGCGGCAAGGAGTTCACGTCGGCGGCCGGCCAGCGCGCGCACGTCGACCACGTGCACCACAAGAAGCCCCGCCCCAAACGCGTGCGCGCACGCGCTCCGACCGCCCCGCCCACCGCTTACCGCGACTAA
Protein Sequence: MSCCILTCVNSEASSAPYEDVTFYKIPTEYHLKQLWTEAIGIPEWQLRPNSEVCSAHFGELDFTISETGEKILLEGAVPSLCLNTPDDLQSIADFRTCRVCLGMDRRMYHIRDNNLHHAYEMLVGIMVETVDRLPKMLCWECTSKLNSIKTFKEKALRTHLLLSERLAINNILTVSDIKSINRINFNLNSHLTLKYNEPDSYDVHIDHDQLGILQEIKIECSKLTEEPKHEVEDVDFKLEDGVKDEVNHSFSDSDDIELSELRTKKVRKRKGKVKKEATEPKRKKRVKKEEVKEKVEDEDELEKFQRGTVKRRVRSYDISDSHFDTRPLTLEEQLAELQARAHSASYLAALYKCDVCYKGFKSADTLGLHVVRHSEKYGEFECFICKRRFKNARHLRLHVSSLHTEQFSCKACDFVTRCRGIAIDHQKWHSGNTYECPHCPSKFGKFTSYMSHLRIKHSSRFACELCGYTFVSKRGVEMHKAKRHKLQDAQMKLDGPYCEECKLRFANDEAYLRHLTQSSVHSSDNDPNRIRNDWGCKEQLGVVRRTRKRRAPGVVTHWVENTDRPKQNIPCEQCGEQMDSYRSYAQHFRMAHPGLNRTKFSRVTGACMCEQCGKMFACKALLLDHMMSHSGEKRFKCETCDKAFTNKNNLAVHQRVHGAQVPTYRCPYCERQFHFYQNCNRHVKTVHKGVKQFQCEICGKEFTSAAGQRAHVDHVHHKKPRPKRVRARAPTAPPTAYRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00745139;
90% Identity: iTF_00164457;
80% Identity: iTF_00933849;