Basic Information

Insect: Lysandra bellargus
Gene Symbol: -
Assembly: GCA_905333045.1
Location: HG995341.1:3205072-3212030[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.8 3.1e+02 2.8 0.3 1 23 88 111 88 111 0.92

2 19 4.9 4e+02 2.4 0.1 3 23 116 136 114 136 0.94

3 19 0.062 5.1 8.4 0.0 2 23 140 162 139 162 0.95

4 19 0.15 12 7.2 0.5 3 23 386 407 384 407 0.95

5 19 0.0077 0.63 11.3 0.2 1 20 415 434 415 436 0.95

6 19 0.043 3.6 8.9 0.7 2 23 446 467 445 467 0.93

7 19 1 82 4.6 0.6 1 23 483 506 483 510 0.86

8 19 0.17 14 7.1 1.7 1 21 515 535 515 538 0.84

9 19 2.9 2.3e+02 3.2 0.5 8 23 588 604 584 604 0.90

10 19 0.86 70 4.8 0.2 2 19 616 633 615 638 0.79

11 19 3.6e-05 0.0029 18.6 1.2 1 23 672 694 672 694 0.97

12 19 1.5e-06 0.00012 23.0 0.9 1 23 701 723 701 723 0.99

13 19 9.1e-05 0.0074 17.3 2.3 1 23 728 750 728 750 0.96

14 19 0.00044 0.036 15.2 1.5 1 23 756 778 756 778 0.98

15 19 4.1e-05 0.0034 18.4 1.2 1 23 784 806 784 806 0.93

16 19 0.0007 0.058 14.5 2.5 2 23 813 834 813 834 0.97

17 19 0.00039 0.032 15.4 0.8 2 23 842 864 841 864 0.97

18 19 0.00043 0.035 15.2 3.8 1 23 869 891 869 891 0.98

19 19 0.0019 0.16 13.2 3.0 1 23 897 920 897 920 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.8	3.1e+02	2.8	0.3	1	23	88	111	88	111	0.92
2	19	4.9	4e+02	2.4	0.1	3	23	116	136	114	136	0.94
3	19	0.062	5.1	8.4	0.0	2	23	140	162	139	162	0.95
4	19	0.15	12	7.2	0.5	3	23	386	407	384	407	0.95
5	19	0.0077	0.63	11.3	0.2	1	20	415	434	415	436	0.95
6	19	0.043	3.6	8.9	0.7	2	23	446	467	445	467	0.93
7	19	1	82	4.6	0.6	1	23	483	506	483	510	0.86
8	19	0.17	14	7.1	1.7	1	21	515	535	515	538	0.84
9	19	2.9	2.3e+02	3.2	0.5	8	23	588	604	584	604	0.90
10	19	0.86	70	4.8	0.2	2	19	616	633	615	638	0.79
11	19	3.6e-05	0.0029	18.6	1.2	1	23	672	694	672	694	0.97
12	19	1.5e-06	0.00012	23.0	0.9	1	23	701	723	701	723	0.99
13	19	9.1e-05	0.0074	17.3	2.3	1	23	728	750	728	750	0.96
14	19	0.00044	0.036	15.2	1.5	1	23	756	778	756	778	0.98
15	19	4.1e-05	0.0034	18.4	1.2	1	23	784	806	784	806	0.93
16	19	0.0007	0.058	14.5	2.5	2	23	813	834	813	834	0.97
17	19	0.00039	0.032	15.4	0.8	2	23	842	864	841	864	0.97
18	19	0.00043	0.035	15.2	3.8	1	23	869	891	869	891	0.98
19	19	0.0019	0.16	13.2	3.0	1	23	897	920	897	920	0.98

Sequence Information

Coding Sequence: ATGTCATCCGCAGAATCGGACGATGAACCGCTCTCGGTTTTGGCCGCAGCTAAAAAAGCAAACCCCCAGCCAGAGGAAGAAAATATAGATGAGGATACACATTCCACACATTCAAAGAAAAGAAAAAAGACAGTAGTTGCAAAAAAGTCGAGCATTTCTCTAAAAATCAATAAAAAACTACAAGAAATACTGTCGCCTCCCGTCACCCAACGACCAGCTGATGTGTGGTTGTACTTGAAAGATCTGAATGCAACGGGACCGTACACATGCTTGTTATGCTCAGCGTGGTTTATAAACAAATCAAAAATGATCATGCACTATGCTTTGAATCACAAGAAGGACTTCTGTGGTATATGCAGATACTTTGTACCAGACAGGGAGGCTTGGTTTGCACATGAAAAGTTTCACACTCCGTGGCCATGCTCACAATGCATTAACTCCTTTGCTACTGAACCCCTTTTGAGGGTCCACCTCCGTACAGCCCACAATTTAGTCCACTGCCAACTATGCCACTTCCGAGTTCCGGCAGACGAAGAATATGAATCACATCTATACCAAAAACACAATGTCACTAATCCAGTTGTCAAAGAAGTGGAAAGCTTATGGGAAATCGACTATGATATACGGAAATATGTTTGTGTTTTATGTTCAAAAGGAGATAACCTATTCTCTACGTTCTTTTCCCATTTCATGGGCTACCATCATTTCACCTTGAAATGTTTGACTGGTATTGTGGCCGGCAAGGACCCACCATTTTTAGTTGATGGTGCGGATGTCAGTGATCAGTTTATTGAGGATCAATTGAAAGGTCTGACACGTCTTGGCTATGTTGATTTGGAGCAGCAGAAAACGCCTATTTCGAGAGCGAATACTGAGTTTCAGGATTCTGAAGTTCCTGAAAATCTTCAGCCCGAGGTAAAACTAGAAGCTTTTAGTGATGAGGAAATAAAAACTGAAAATGCTGATACCACAGGAGATTCAGATCTGAACATTGATTATGAAGGTGTACAAGATTTTGATGTAACTCTAACAGAAGTGATAGTTTTAGAAAACAGCTACTTCAACTATTTAGAAAGTACACAAAGGGCTCTCAATTTAAACACAGTGCCGGAAAAATCAGATATCATGTATGAACATATGAAACCAGAATTATTCTGCTCTCTATGTGACTCAAAATTTCAAACTAAACCAGCATTTTTGGTACATATTTCCAAAATGCATAACGTAAGAGTAGTGCCTTTGTATTCATGCCGAGTTTGTGCAACCACATTTGACACACAGACGGAACTTAAATCACACGTTACAGAGGAAATGGGTGACTTTGAGGATCTATGGATATGTCAATTCTGTGACAAAGAATTTGATAATAGAGAGTCCTCTAGAAGACATTTGACAGAACACTGGCACAGCTTGGAGTTTGACAACTGTTTCAGTCCGCACCTAGGATTCAAATGCAAATACTGTCCTACATTATTTTGGAATGAACCGGAACGAGAAGCACATCAAATAAGGGCACATATCAACAAACATAAGGACGACTTTTATAAATGCCAGAAATGTTCTTTAATGTTTAGTGATAAGGTTTGGTTTATGTTTCATTATTTAGAAAAGCATAAAAGTGATGAAACTAAACATTCCTATCTATTCAAATGTTGTGTATGCTGCATAGTTCTGCAGAGTCTACAGGATACGAGATCACACTTTAAGGAACATCATCCGCAAGCAAAGAAAACTTATTGCTCTCTAGATCCATGTAAATTCAAACCTCTGACACACAGGAAATCATTAAAAGTACATGTGAAGACTATCCATGGCTCCCCTAAAAGTCCGAAGCGTGAGTGCGTATCGTGCGCTGAGTGCGGGCGCGGGTTCGCCACGGCGCGTGCGTGCAGCGCCCACGCGACGCAAGTTCATGGCCAGGGGAAATTCAAGTGCAAACTGTGTAGAGATGTGCTGCATACTTTGGATGAGAGAAAACTCCACTACCTCCTTCGCCATCCCGGCCGCCATCCGTTCGAGTGCGGTGACTGTGGCAAGTCATTCCAATATAAGTCATCGCTATACATGCACAAACAGGAACACGCGCCCAATAAACAGGACTACAAGTGTGAATACTGCGGGAAGATTTTTGCGAAGAAGGATTCCTTCCGCGAGCACCTCCAAATCCACTCTGGTCCGCGGCACGCGTGCTCCTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGTCGTCATACAGGCGAGCGGCCGTACGCGTGCCCGCACTGCCCGCGCACATTCGCCGATAAGGGCGCCTGTACCGCGCACTCCAGAACCCATTCGAAAGCTACATCGTTCGCGTGTATTTACTGTGGCCAGACATTCGTTCAGAAGTCCAAGCTTACTTACCATATTCGAAAACATACTGGGGAGAATTTGGAGTCATGTACAGTGTGTTCCAAACTATTTACCAGCGCGTGTTCTCTACGCGAGCACATGAAGATACATGTTGAGAACAAACAGATTGTCAAGTGTCCACTTTGTGACAAGAAATACCAAGACGAGCGTTACATGCTTCGACATCTACGGACTTCGCACACCGGTTCCACATTCACGTGTCCCGTCTGTCGCAAGTGCCTTACTAGTTCCACTGGGCTACGTCATCACGTCCTCACTCATAGCCGCCTCAACACTTTCCGGTGTAAGATGTGCACCAAATCATATGCAGCAAAGAAGTCGATGATAAAGCATCTCAAAAAGCGACACAATTTGGACATATCATTGATTAACACCAAAGAATATTTCTTCCGCTTGGACCCAAGGGACTGCAAACTGGGCCTAGACGAGGAAACAATGAACATGATATTTGGACCCAAAAAGTTTGTCAATGATGTTTTGATCAGTGATTATGTGACTTTAGCTAATAATGTTAATGTGAATGAAGATAAGAAAGAAAGCAGCGATGAACAAGCTAAAGAGAGTGATAAAAGTGATAGTGGTATGGAGTTCGACGCAGTTAATATTAAACAAGAAGTGCATAGTGAGGAGAATTCGTTAGAACCGACAGATTTTGTGAGTGTCAAAATTGAAAATTTAGATGAGAGTTTCAATGAAGAAACCACATAG
Protein Sequence: MSSAESDDEPLSVLAAAKKANPQPEEENIDEDTHSTHSKKRKKTVVAKKSSISLKINKKLQEILSPPVTQRPADVWLYLKDLNATGPYTCLLCSAWFINKSKMIMHYALNHKKDFCGICRYFVPDREAWFAHEKFHTPWPCSQCINSFATEPLLRVHLRTAHNLVHCQLCHFRVPADEEYESHLYQKHNVTNPVVKEVESLWEIDYDIRKYVCVLCSKGDNLFSTFFSHFMGYHHFTLKCLTGIVAGKDPPFLVDGADVSDQFIEDQLKGLTRLGYVDLEQQKTPISRANTEFQDSEVPENLQPEVKLEAFSDEEIKTENADTTGDSDLNIDYEGVQDFDVTLTEVIVLENSYFNYLESTQRALNLNTVPEKSDIMYEHMKPELFCSLCDSKFQTKPAFLVHISKMHNVRVVPLYSCRVCATTFDTQTELKSHVTEEMGDFEDLWICQFCDKEFDNRESSRRHLTEHWHSLEFDNCFSPHLGFKCKYCPTLFWNEPEREAHQIRAHINKHKDDFYKCQKCSLMFSDKVWFMFHYLEKHKSDETKHSYLFKCCVCCIVLQSLQDTRSHFKEHHPQAKKTYCSLDPCKFKPLTHRKSLKVHVKTIHGSPKSPKRECVSCAECGRGFATARACSAHATQVHGQGKFKCKLCRDVLHTLDERKLHYLLRHPGRHPFECGDCGKSFQYKSSLYMHKQEHAPNKQDYKCEYCGKIFAKKDSFREHLQIHSGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTAHSRTHSKATSFACIYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKIHVENKQIVKCPLCDKKYQDERYMLRHLRTSHTGSTFTCPVCRKCLTSSTGLRHHVLTHSRLNTFRCKMCTKSYAAKKSMIKHLKKRHNLDISLINTKEYFFRLDPRDCKLGLDEETMNMIFGPKKFVNDVLISDYVTLANNVNVNEDKKESSDEQAKESDKSDSGMEFDAVNIKQEVHSEENSLEPTDFVSVKIENLDESFNEETT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289138;
90% Identity: iTF_01217752;
80% Identity: -