Basic Information

Insect: Lysandra bellargus
Gene Symbol: Sall1
Assembly: GCA_905333045.1
Location: HG995320.1:15825185-15836214[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0031 0.25 12.5 4.3 1 23 241 263 241 263 0.99

2 11 1.4 1.1e+02 4.2 0.0 1 23 270 293 270 293 0.93

3 11 0.14 12 7.3 1.9 1 23 297 319 297 319 0.97

4 11 0.0011 0.089 13.9 0.5 1 23 324 347 324 347 0.97

5 11 0.24 20 6.6 2.3 1 22 359 380 359 380 0.94

6 11 0.00073 0.06 14.5 0.0 2 23 391 412 390 412 0.95

7 11 0.039 3.2 9.1 0.8 1 23 415 438 415 438 0.93

8 11 9.5e-05 0.0078 17.3 1.6 2 23 457 478 457 478 0.97

9 11 1.1e-05 0.00087 20.3 0.6 1 23 484 506 484 506 0.98

10 11 1.1e-06 8.9e-05 23.4 1.4 1 23 512 534 512 534 0.94

11 11 1.1e-05 0.00094 20.2 1.8 3 23 542 563 540 563 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0031	0.25	12.5	4.3	1	23	241	263	241	263	0.99
2	11	1.4	1.1e+02	4.2	0.0	1	23	270	293	270	293	0.93
3	11	0.14	12	7.3	1.9	1	23	297	319	297	319	0.97
4	11	0.0011	0.089	13.9	0.5	1	23	324	347	324	347	0.97
5	11	0.24	20	6.6	2.3	1	22	359	380	359	380	0.94
6	11	0.00073	0.06	14.5	0.0	2	23	391	412	390	412	0.95
7	11	0.039	3.2	9.1	0.8	1	23	415	438	415	438	0.93
8	11	9.5e-05	0.0078	17.3	1.6	2	23	457	478	457	478	0.97
9	11	1.1e-05	0.00087	20.3	0.6	1	23	484	506	484	506	0.98
10	11	1.1e-06	8.9e-05	23.4	1.4	1	23	512	534	512	534	0.94
11	11	1.1e-05	0.00094	20.2	1.8	3	23	542	563	540	563	0.97

Sequence Information

Coding Sequence: ATGTTGGCTTGTCGAATATGTTTGGCTACGGACATACGATTGTACGATATAAACACCACGTACAATCTGAAAACGGCGTACGAAACCTTAACTGGATCTCAGATATCAAGAGAAGACAGTTTGCCCCAACATATTTGCAGCTACTGCAGCATATTGCTAGTAAAATGCTCATCCTTCCGAGACAAATGTTGTTACACCCAAGAAGTGTTGAAGTATCTTATTCCAGACCAGAAAGAGATAACACAAAGTCATATCACATCAATCCAACAGTCCAATCCAATAAAATGTTTCGTAAGGCTCTCTAGAAGCGACACATTACCACTAATCGAGATTGAGTATAAGGAACCAATCGAGGATGTAGCAGTACCTGTTCCCATCAAGGAAGAGTACGAACTAGATTTAGATAGCTTAGTCAAGATAGAAGAATGTCTAGCAGAGAAAAAGGTTGAAAAAACAATACATAAAGTCAAGAAAACCAGAAAGAAAAAGAAAAAATTAGAGGACTTGAAAATTGAGCCGGACTTAAGTGGTATAGAGATAGATAACCCCGGAAATGCCGATGCAGACTATGAAAGTGACAGGGATCAAGATAATCATATTGATATGGATGAGGAAAGTGTTGAAGATTTAAAAGAGGCTAAACTGATAATACTGAGCGTGGATGAGCAGTTCCAGGAGTTGGAGGAGCGGAAGACCTCGGCCAACTACACCAAGTCCAAGTACCAGTGTCATCGGTGCTTCCGCGGGTTCATATCGGAGACCACATTTAATAATCATCTGATGAAACATGATCCGAAGAGCGGCGATCACGAGTGCGTCGTGTGCGGCGTGCGGTGGGTGGAGCCGCGTCTGCTGCGCGCGCACGTCATCTCCGCCCACGCCCGCAAGTTCCAGTGCACGCTGTGCGATCACGTGTCGCGCTCCGCCTATCGAGCAAAGGAGCACTACAAATGGCACAATGGTTTTAAATTCAAGTGTAAGCTATGTGATGCGACTTTTGGCAAATCGACGTCGGCGCTGACGCATATGCGGCTGGCGCACCCGTCGCGCCACTCGTGCGAGACGGACAACACCTTCCAGTGCGTCCACTGTCAAGTGCGGTTTCAGTGTCAGGGGGCGCTGACCAAACATCAGGAGACCACCGCCAACGGAGTCTGTGATACTAACATACCGTGTCTCCAGTGCGGGCAGGGCTTCGCCTCGGAGGAGCTGCTCCAAACACATCTAAAGGAGCATCAATCATTCTCTTGTGATGAGTGTTCGTGCACGTTCACCAGCGCGCTGTCGTACGGCGTGCACGTGGAGCGCGTGCACTTGGGCGTGCGCAAGCGCAGCACGAGCGCCGGGCGACGACCGCTCGACACCGCCGTCTGCGAGGTCTGCGGCAAGAAGTGTGTCAATATGGCGACTTTGCGGTATCACCAGCGAACACACACGGGCGAGAAACCATTCGCGTGCACCGACTGCCCCAAACGGTTCTCTGTATACCAAAGACTACAGATCCACATCCGCACGCACACGGGCGAGTCCCCGTACAAGTGTCCGTACTGCCCCAAGGCGTTCAAACACAAGGCTGCGCTCAACAGACACGACCGGGTCCACTCGGGGGCGCGGCCCTACGGCTGCCCACACTGCGGCAAGACGTTCACACAGTCCAACTCGCGCAAGATGCACATCAACACCGTACATCTCAAACTGCCGGCGCCATATCGTAACCGGAAAACCACTTAG
Protein Sequence: MLACRICLATDIRLYDINTTYNLKTAYETLTGSQISREDSLPQHICSYCSILLVKCSSFRDKCCYTQEVLKYLIPDQKEITQSHITSIQQSNPIKCFVRLSRSDTLPLIEIEYKEPIEDVAVPVPIKEEYELDLDSLVKIEECLAEKKVEKTIHKVKKTRKKKKKLEDLKIEPDLSGIEIDNPGNADADYESDRDQDNHIDMDEESVEDLKEAKLIILSVDEQFQELEERKTSANYTKSKYQCHRCFRGFISETTFNNHLMKHDPKSGDHECVVCGVRWVEPRLLRAHVISAHARKFQCTLCDHVSRSAYRAKEHYKWHNGFKFKCKLCDATFGKSTSALTHMRLAHPSRHSCETDNTFQCVHCQVRFQCQGALTKHQETTANGVCDTNIPCLQCGQGFASEELLQTHLKEHQSFSCDECSCTFTSALSYGVHVERVHLGVRKRSTSAGRRPLDTAVCEVCGKKCVNMATLRYHQRTHTGEKPFACTDCPKRFSVYQRLQIHIRTHTGESPYKCPYCPKAFKHKAALNRHDRVHSGARPYGCPHCGKTFTQSNSRKMHINTVHLKLPAPYRNRKTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935086;
90% Identity: iTF_00164644; iTF_01248457;
80% Identity: -