Lbel011897.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995320.1:14182741-14205614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.004 0.33 12.2 1.0 1 23 200 223 200 223 0.95 2 11 0.00094 0.077 14.1 5.1 1 23 230 252 230 252 0.98 3 11 0.49 40 5.6 1.3 1 23 256 279 256 279 0.95 4 11 0.0014 0.11 13.6 0.9 1 23 287 309 287 309 0.98 5 11 0.00011 0.0094 17.0 0.3 2 21 320 339 320 339 0.93 6 11 0.00048 0.04 15.1 0.1 1 23 375 397 375 397 0.98 7 11 0.01 0.86 10.8 0.2 2 21 406 425 405 430 0.90 8 11 5e-05 0.0041 18.2 0.7 1 23 438 461 438 461 0.96 9 11 0.0015 0.12 13.5 4.2 1 23 467 490 467 490 0.95 10 11 0.00016 0.013 16.5 1.3 3 23 498 519 496 519 0.91 11 11 0.00019 0.016 16.3 0.4 1 23 525 548 525 548 0.98
Sequence Information
- Coding Sequence
- ATGAATTGCAGCGGCTGTATGAATTCTGACCGTAAAATCAAATGCATTAGTGCCGCAAAGCAGAAGGAATGCTTCTTTGAAATCATCCGAAATATTCCAATGTATGTCCCGGACGATTTTTCGCTGTATTTGTGCTGGGAGTGCACAGCGGAATTGTATCGTTATTCAAGATTCAAGGAACGAGTTACTTACTGTTACAAGCTGTTACATAGTATTAAAGACGAAGTAAGTGAAAACTGTAAACCTGTATCGAGTTTAAGTAGACAGGATCTATTCAATGTAGATTATGATCCAGATAAAGGTTTAGAATGTTTGGAAGTTATAGTAAAAGTAGAACAAAATAACCAAGAAGAAGATGAAATTAAAATAGAAGATGATTATTATTCAAATGATGAAATACCTCTAATTGAAATGAAAAAGAAGAAAGTTGCAAATGGTCATACTAAAGTTGCCAAGAAAATGAAAAAAAAGAAAGTTCCAAATGGTCACACTAAAGTAAAGAATAAAGCGGAATATGTAGAAATAGAATTAAATGCTGAGGAATTACAAGAAGAAAGAAAAAGATTACAGAAAGAAGAAAATTATGTTAATGCTATGTTTAGATGTGAGAAATGTATTGTAACATTTCCTAATTCTGATGACTTAAAAGATCATATTCATTTAAAACATGATAAGCATGCTGCGCTATTCACATGCAACATATGCGAGTGCTCGTTCAAATATAATGTGTCATTCAACTACCACATGACTAGACACACGAGGAGATTCCAGTGCACCGCCTGCAGCGACAGGTTCATCACCAAGAGTTCTGCTGTCCATCATTATAATTTGGTGCACTGTCTGGGCAAGTCAGCGAGTTTCCCTTGCGAGTTCTGCCCCAAAGTGTTTCAATGGCGGACGTCGTTGCGAAAACACTACGAGACGCACCGCATACAGAACGGACAGAAACGGAAACCGTACTGCGAAGTTTGCCAATTGTCGTTCACGTCTTCGGGGAATCTACAGAAGCACGTGAAATGCAGCTCCAAGCATCAGATACAACTTAAACTACGGAAACTAAAAGAAAATGGCGAGACGGCGACTCCGTCTGACCGCAGCGAGATGGCGCGCGCGGCGAAGCGGTACGCGTGCCCGCAGTGCGGCGCGCGCTACCAGTGGCGGGGGAACCTCATGCGGCACATCAGGAGCCATCAGGCCAAGGCGGCGGGTGCGCTGGTGTGCGAGCCGTGCGGGCGCAGCTTCTCGTCCGTCGCCACGTACCGCCAGCACATGACCATCTCCAAGAAACACGTCAGCGAGGAAGACTTCAAGTTCATGTGTAGCCAGTGCGGACGACGGTTCGTGAACCGCACGCGGCTGCGCGACCACATCAACTGGGATCATCTCAAGAACTACACGCACACCTGCAACACCTGTCAGAAGGTGTTTAAGAGCCACACGTCGCTGTACCTGCACGAGCAGGTGGTGCACCGCAAGCAGCCCGACCACCTGTGCGATCACTGCGGCAGGCCCTTTCCGAACCAAGCGAAACTCCGCAGTCACGTGTTGGCGCGGCATAGCGGCGCGGCGGCGTACGAATGTGCCGACTGCGGCGCCCGCTTCGCCTGGCAGTCATGTCTGACGCGACACGTGCGGCGAGCGCATAAGCACAACGCAAAAGACGCAACGGTCGATACAACGCACGCAACGGTTACGCTCGGAACGCATGCGCACGCACATGAGCAATGA
- Protein Sequence
- MNCSGCMNSDRKIKCISAAKQKECFFEIIRNIPMYVPDDFSLYLCWECTAELYRYSRFKERVTYCYKLLHSIKDEVSENCKPVSSLSRQDLFNVDYDPDKGLECLEVIVKVEQNNQEEDEIKIEDDYYSNDEIPLIEMKKKKVANGHTKVAKKMKKKKVPNGHTKVKNKAEYVEIELNAEELQEERKRLQKEENYVNAMFRCEKCIVTFPNSDDLKDHIHLKHDKHAALFTCNICECSFKYNVSFNYHMTRHTRRFQCTACSDRFITKSSAVHHYNLVHCLGKSASFPCEFCPKVFQWRTSLRKHYETHRIQNGQKRKPYCEVCQLSFTSSGNLQKHVKCSSKHQIQLKLRKLKENGETATPSDRSEMARAAKRYACPQCGARYQWRGNLMRHIRSHQAKAAGALVCEPCGRSFSSVATYRQHMTISKKHVSEEDFKFMCSQCGRRFVNRTRLRDHINWDHLKNYTHTCNTCQKVFKSHTSLYLHEQVVHRKQPDHLCDHCGRPFPNQAKLRSHVLARHSGAAAYECADCGARFAWQSCLTRHVRRAHKHNAKDATVDTTHATVTLGTHAHAHEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164724;
- 90% Identity
- iTF_01217739; iTF_00404121;
- 80% Identity
- -