Basic Information

Insect: Lysandra bellargus
Gene Symbol: -
Assembly: GCA_905333045.1
Location: HG995320.1:14125272-14142798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.4 6.1e+02 1.9 0.1 1 21 270 290 270 293 0.83

2 10 0.022 1.8 9.9 0.1 1 23 325 347 325 347 0.96

3 10 0.018 1.4 10.1 3.6 1 23 397 420 397 420 0.96

4 10 3.5e-05 0.0029 18.6 1.7 2 23 425 446 424 446 0.97

5 10 0.01 0.83 10.9 2.5 2 23 454 474 454 474 0.98

6 10 1.6e-05 0.0013 19.7 0.6 1 21 480 500 480 505 0.94

7 10 0.00039 0.032 15.3 1.4 1 23 513 536 513 536 0.94

8 10 3.4e-05 0.0028 18.7 0.1 1 23 542 565 542 565 0.97

9 10 3.9e-05 0.0032 18.5 0.2 1 23 575 597 575 597 0.95

10 10 6.8e-05 0.0056 17.7 1.4 2 23 604 626 603 626 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.4	6.1e+02	1.9	0.1	1	21	270	290	270	293	0.83
2	10	0.022	1.8	9.9	0.1	1	23	325	347	325	347	0.96
3	10	0.018	1.4	10.1	3.6	1	23	397	420	397	420	0.96
4	10	3.5e-05	0.0029	18.6	1.7	2	23	425	446	424	446	0.97
5	10	0.01	0.83	10.9	2.5	2	23	454	474	454	474	0.98
6	10	1.6e-05	0.0013	19.7	0.6	1	21	480	500	480	505	0.94
7	10	0.00039	0.032	15.3	1.4	1	23	513	536	513	536	0.94
8	10	3.4e-05	0.0028	18.7	0.1	1	23	542	565	542	565	0.97
9	10	3.9e-05	0.0032	18.5	0.2	1	23	575	597	575	597	0.95
10	10	6.8e-05	0.0056	17.7	1.4	2	23	604	626	603	626	0.96

Sequence Information

Coding Sequence: ATGGAGCAAGATGTTGAGGATGGCTTTAAACCTTTGTGCTGTGCTTGCCTTAGCACGGACCGTAATTTAGTTGCAATACAAGGATCTACCGAAATTGTTGAAGTTTTTAAATTACTGTTGTTCAATTATGCAGCTGATAGAATTTTAGATACAGAAATTCCTAAGCAATATTTATGTTGGGAGTGTGTGGCAATAATGAAGAGGATATCTAAATTCAAAAAGCAGGTCCAAAATGCACAAGAACATTTGCGAGTTTTAACACTAGGAAGTACTTTAGAGGCGTTAGATCACACATACCTATCTCAATCCCTTTCGTCGTTGGAGTGTGTTATGAAGACTGACTATGACAGGATGTACTTGGATTACACACACGAGGATATCATCACACCGGATTGGTCCCAGCAGTACATATCCATATCCGAGGAGATGAAGCCGCAGCAGTATGATATGTCTCAGTCGTTAAGAGACAACATGACCCTTGGAATGGCCAGTAACGAAGTTATCACTATGCCCGAGTTGGTTGTGGAGAATCCTATGACGGGAGTGATGTCACACATAGTTGTGAGTGATTCGCTGCTAGGAGAGACCTACACCACCACACATGTAAAGGGAGAGATGCCAGAACTTGTTCTTGATTCAACAACACCTATAGCACCGGTAATAATTCGGCAGCCCAAAAAAATTAAGATGGAAAATGATGATAAGGAAAGACTAAAAGCTGGATACAATACATTACATTTGACCGAATCTGAAATGCTTGAGTTAAGAAATGAAGATAAGAAAAAGGTGAAATACGCAAGTGCGGTTTACAAGTGTGAGCTGTGCATCATCGGTTTCTTCAACCAGGGGCAGGTAGAAGGTCATTTCCTGGCTGAACACACACCTAAGCCAGGCTTTGAGGCGTGCAAGGTGTGCTACGTGTACGTCGAGACGAATAAGCTGTCTGCGCATACGGACGCTCATTACACAGTGTACGAGTGTCGCATTTGCGGGCGCCGCGAGCGAACATCGCGTGCTGTTACGCGACACATCGCTGCTCATCTGCGCCCGCGCCTGCCGCACCCCGCCGCGCTGCATGTTGACGACATAAAGAAAAAAAAGAAGAAGGAATCCGAAAAAGAGCTCGATAAGCCTCCGCCGAAGCCTGGTGACCTGAGGAAGCTGCTGTCCAAAACCACCATAGTTGGTTACAAGTGCCTCGAGTGCGACATGTTCTTCAAGACATCGAGGGCGCGGAAAACGCACGTCGCTCGCTGCCACCGCGAAGGGCTGCAGTGCGACATCTGTAAACGATTCTTCGTGAACAAGACCACGCTCACCACACATCTCAAGTTACATGAAGGTCCGCAGCCGCGCGAGAAATGCCACATCTGCAACAAGATGGTGCGCGTAGTGCAACTGAAATACCACATCCGGCGACACGAGAACAAGACGCGGTACGAGTGTACGGAGTGCGATAAGGTGTTCTCCCACCTCGCTACCTACCAGGCCCATCTCAAGTATGCCAGACCGCACGCCTCTGAGGGTGTGTTCAAATACCCCTGCCCAATGTGTCACAAAGGCTACCCGACCAAGGACCAAATGCAGGACCACTTCAACTACCAGCACCTCGGCAAGACCAAGCACAAATGCCCCATCTGTGATAAGCCGATAGCGTCAAAGGCGAATGTGGAGCGTCACATGGCGCGAGTACACGGTGAGAAGAAGGAGAAACCGCGCAACCACGTCTGCCAGGAGTGCGGGAAGGCCTTCACAGACAAAAAGGCGGTGACTCAACACGCGGCGATCCACTCAGCGGAGCGGCCTTTGTCCTGCGAGATATGTTTCCAGACGTTCAAGCAGAAAGCCTCGCTGTACACACATCGCCGGAGAGTGCACAAAGTACAAACGCCGAAGCGAGTCGTCGAGTTCATGGATACTAAGGTCACGTAA
Protein Sequence: MEQDVEDGFKPLCCACLSTDRNLVAIQGSTEIVEVFKLLLFNYAADRILDTEIPKQYLCWECVAIMKRISKFKKQVQNAQEHLRVLTLGSTLEALDHTYLSQSLSSLECVMKTDYDRMYLDYTHEDIITPDWSQQYISISEEMKPQQYDMSQSLRDNMTLGMASNEVITMPELVVENPMTGVMSHIVVSDSLLGETYTTTHVKGEMPELVLDSTTPIAPVIIRQPKKIKMENDDKERLKAGYNTLHLTESEMLELRNEDKKKVKYASAVYKCELCIIGFFNQGQVEGHFLAEHTPKPGFEACKVCYVYVETNKLSAHTDAHYTVYECRICGRRERTSRAVTRHIAAHLRPRLPHPAALHVDDIKKKKKKESEKELDKPPPKPGDLRKLLSKTTIVGYKCLECDMFFKTSRARKTHVARCHREGLQCDICKRFFVNKTTLTTHLKLHEGPQPREKCHICNKMVRVVQLKYHIRRHENKTRYECTECDKVFSHLATYQAHLKYARPHASEGVFKYPCPMCHKGYPTKDQMQDHFNYQHLGKTKHKCPICDKPIASKANVERHMARVHGEKKEKPRNHVCQECGKAFTDKKAVTQHAAIHSAERPLSCEICFQTFKQKASLYTHRRRVHKVQTPKRVVEFMDTKVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289086;
90% Identity: iTF_00404099;
80% Identity: iTF_00935072;