Basic Information

Insect: Lysandra bellargus
Gene Symbol: -
Assembly: GCA_905333045.1
Location: HG995324.1:2326350-2332689[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.013 1 10.6 9.7 1 23 166 188 166 188 0.96

2 8 3.5e-05 0.0029 18.6 2.9 1 23 194 216 194 216 0.98

3 8 4.9e-05 0.004 18.2 2.9 1 23 222 244 222 244 0.95

4 8 4.1e-07 3.3e-05 24.7 3.4 1 23 250 272 250 272 0.99

5 8 0.00018 0.015 16.4 2.0 1 23 278 300 278 300 0.94

6 8 0.0036 0.3 12.3 6.0 1 23 306 328 306 328 0.99

7 8 3e-06 0.00025 22.0 1.3 1 23 333 355 333 355 0.98

8 8 1.7e-07 1.4e-05 25.9 5.0 2 23 362 383 361 383 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.013	1	10.6	9.7	1	23	166	188	166	188	0.96
2	8	3.5e-05	0.0029	18.6	2.9	1	23	194	216	194	216	0.98
3	8	4.9e-05	0.004	18.2	2.9	1	23	222	244	222	244	0.95
4	8	4.1e-07	3.3e-05	24.7	3.4	1	23	250	272	250	272	0.99
5	8	0.00018	0.015	16.4	2.0	1	23	278	300	278	300	0.94
6	8	0.0036	0.3	12.3	6.0	1	23	306	328	306	328	0.99
7	8	3e-06	0.00025	22.0	1.3	1	23	333	355	333	355	0.98
8	8	1.7e-07	1.4e-05	25.9	5.0	2	23	362	383	361	383	0.96

Sequence Information

Coding Sequence: ATGGACACGTTTCTTATCATCGGTACGTCACAGTGGCAGGAAAAAAGTGCCACGCTCGTTTTCATACAAATGGAGCGACATGCGACCCGAGTTACTCCTTTGGTCCAACTTGGTGTATTTAATGCTGATCATTTGTCATTACCTAACGATTATGTGGAAATTGAGGTGCAACCGGCTATTCCAGTTATCATTAAAGAATATATCAAAAAAGAGTTTGTGGAGAATGCCTTCGGTAGCTACGAAATTAAAGAAGAAACCAAAGAAGAACATATCAAAAAAGAGTTTGTGGAGAATGCCTTCGGTAGCTACGAAATTAAAGAAGAAACCAAAGAAGAACATATCAACAATGAGTTTGTGGAGAATGCCTTCGGTAGCTACAAAATTAAAGAAGAAACCAAGGAAGAAAATATCAAAAATGAATATGTGGAGAGCCCTGATTCTAAAGACAAGACTGCAATAGGCAAGCAAATAGACACAAAAGACAATGAAAAGCCTCACTTTTGTGATGTTTGCGGACGTAGATTCTTCCATCTTTGCCATTTGAGAGTGCACAAACGGATTCATTCCGGAGACAAACCGTACAGTTGTGATGTTTGCAACAAGAACTTCGCTCAGATATGTAACTTGAAAACACACCGGCTCACACATGATGGCGTCAAAATCTTCTGCTGTGACGTTTGTGATAAAAAATTCGCACGATTAAACTCCTTGAAGAGACACAAGGCACTTCACACTGGGGAACAACCGTACAGATGTGGTATATGTGGCAGGAGATTCAGTCACTCGAGCAGCCTCCGGACACACAAGTTGACACATTCCAACGAGAAATCCTACACTTGTGATGTGTGCGGGGAAAAGTTCACACATCTAACTATGATGAAGCGACACAAAGTGTTACATTCAGATGAGAATCCGTACGTTTGTCATTTCTGCAACGAGAAGTGCCCGCATGTTAAAGCGTTGAAATTACATCTAAGAACGCACCGAGGTAAGCAGTTTGTATGTGACATTTGTTACAAGCAGTTTTCATCGAGGGCGAATCTGACGCAACATAAGAAGATACATACGGACGACAATCCATGTACTTGTGATATTTGTGGTAAGGCGTTCAGTCGTAGAGACCACTTGCGACGGCACCGGCTAACCCATGACAAATATTTAGAGCTAGTGAAACAGGAGTCGAGTCAGCAGCAGTAG
Protein Sequence: MDTFLIIGTSQWQEKSATLVFIQMERHATRVTPLVQLGVFNADHLSLPNDYVEIEVQPAIPVIIKEYIKKEFVENAFGSYEIKEETKEEHIKKEFVENAFGSYEIKEETKEEHINNEFVENAFGSYKIKEETKEENIKNEYVESPDSKDKTAIGKQIDTKDNEKPHFCDVCGRRFFHLCHLRVHKRIHSGDKPYSCDVCNKNFAQICNLKTHRLTHDGVKIFCCDVCDKKFARLNSLKRHKALHTGEQPYRCGICGRRFSHSSSLRTHKLTHSNEKSYTCDVCGEKFTHLTMMKRHKVLHSDENPYVCHFCNEKCPHVKALKLHLRTHRGKQFVCDICYKQFSSRANLTQHKKIHTDDNPCTCDICGKAFSRRDHLRRHRLTHDKYLELVKQESSQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01248456;
90% Identity: iTF_00935065;
80% Identity: -