Lbel014738.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995329.1:2268485-2298634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.3e-06 0.00035 21.5 1.5 3 23 185 205 183 205 0.98 2 12 9.2e-07 7.6e-05 23.6 3.9 1 23 211 233 211 233 0.99 3 12 8.4e-05 0.0069 17.4 0.3 1 23 239 261 239 261 0.97 4 12 0.0012 0.096 13.8 1.0 1 23 267 289 267 289 0.92 5 12 7.6 6.2e+02 1.9 0.6 2 17 495 510 494 511 0.89 6 12 3.9e-06 0.00032 21.6 2.5 1 23 659 681 659 681 0.98 7 12 1.9e-05 0.0016 19.5 6.9 1 23 687 709 687 709 0.98 8 12 4.6e-05 0.0038 18.3 1.7 1 23 715 737 715 737 0.98 9 12 0.005 0.41 11.8 1.4 1 23 743 765 743 765 0.94 10 12 0.0003 0.025 15.7 4.2 1 23 771 793 771 793 0.98 11 12 0.0013 0.1 13.7 8.0 1 23 799 821 799 821 0.96 12 12 0.13 11 7.4 0.4 1 14 827 840 827 842 0.90
Sequence Information
- Coding Sequence
- ATGTTGAGTGCTGGATGTGTTATATCTGCCACACAAGACTGCGACAATGTCACCAGCTGCAGCAGTGTGCTGTGCAGACACGAGATCTTGTTAAAAATGAAATCCAAAATAAGGACAAAAAATATATCAATAACAGAACCCTCTTTGTATATCAAGCGGGAGTCGGATGTGAAGATAGAAGTTTGCAGCGACAATGAACTTATAGTTGGTCTTATCGACAATGATGTAGAGAAAAAAAATTCTATTAAATCAGAATATGCACCAACAAAAAAGGTTCTAGAAATTACTTTCGAGAAGGTTAGTGAGAGTGAAATTGATGAATATGACCAATGTCCCACAACAAGCTCAGGAAACACAAAAATAATAAAACAAGAGAGAGCAGAAAATATAAGACATGAAGATGACGAAGAAAACGACACAGATCAGGCACAAGACGCCAGCAAAGCTGTGGTCAAGAAACCTCATAAATGCGATGTCTGTTGTAAGAGGTTTTCATGCAAAAGCCTACTTCTCATACATTCCAGAGCACACACAGGTGAAAAACCATTTGGCTGCGATGTATGCCCCAAGAAATTCTCACAGAAGAGTCATTTGATCATCCACAAACGAATACACACAGGGCTCAAACCGTTCACTTGTAATGTGTGCTCAAAGAGTTTCTCGCTAAAAACACACTTGAATGTCCACATGCGTACTCACACTGGGGATAAACCATACTTCTGTGATATCTGCTCCAAGCAGTATGCGCAGAACATAGATTTGCAACGACACCTTCTCATTCACACGGGCAATAAGGCTTTCAGCTGTGAGGTCTGTTCAAAAAAATTTACACAGAAGAGATATTTGGATATACACAGTGTTGTACACACGGGCATAAAAAGGAAATCTACCTCTAATACTGATGTGAATGAGGACATACTGGTTGAGAGGCACAGCGACATTGCCCAGGAAAAAAGCCAAGACGCTGTTGAAGCCCCTGTTGCTAGTGATGAGATAGAATTAGAAAATGTACTTCCAGAGATGCCAGATGAAGATAAATCTATTGAATTAGGGGGGGGGGAGAATGAGCAAAGAGTTGAAGAACGAGTCAATGATGATAATGAAGGGGAGATCATTGAGCAGTTAGCAAGACATGAGATGCGCTTGAGAGACCGCTCTCTCCTCAGACGCCCTGAACTTCAAGTTGAGCTAGTAGAAAATGAAGCTGACAAAAAAACTTCCATCAAATCAGAATATGCACCCACAAAAAAGGTTCTAGAAATTACTTTCGAGAAGGTTAGTGAGAGTGAAATTGATGAATATGACCAATATCCCACAACAAGCTCAGGAAACACAAAAATAATAAAACAAGAGAGAGCAGAAAATATAAGAGATGAAGGTGAGGATCAAGACAAACAAAACAACGTAGATCAGACACAAAAAGCCAGCAAAGCTGAAGCCAAGAAACTGCACAAATGTGATATCACAGATGTTGAGTGCTGGATGTGTTACATCTGCCACACGAGACTGCGACAATGTCAACAACTGCAGCAGTTGGCCATGCAGACACGAGGTGCTACTGAAATTCTTGTCCACAATAAGGTTAAGGTTGGAGTGTATAGATCAGTCTTAGAGCTATCTTCATCTAGAACCATAATTGTATCAACAACAGAACCCTCTTTATTCATAAAACAGGAGTCAGATGTGAAGAAAGAAGTTTGCAGTGACTACGAACTTGAAGCTGAATTCGAAGGAAACGAAGTAGAGCAAAAAACTAATATCAAAACAGAATATGCACCAACAGAAACGGTAGAAAATACTTTTGAGGTCAGTAGGAGTGAAATTGATGAACATGACCAATATCCCACAACAAGCTCAGGACACGCAAAAATAAAACAAGAGAGAGCAGAAAATATAAGAGATGAAGGTGTGGATCAAATCAAACAAGACACAGATAAGACACAAGACGCCTGCGAAGCTGAGGCCAAGAAACCGCACAAATGTGATGTCTGTTCTAAGAGGTTTCCGACCAAAAGCCAACTTGTCACTCACGCCAGGACACACACAGGAGAAAAACTATTTTCCTGTGATGTGTGTTCAAAGAGCTTCTCGCACAAGTATTACTTAAAGCGCCACATACATAGCCATTCTGATGATAAACCATACTTCTGTGACATCTGCTCCAAGCAGTACAAACAGAAATTGGATTTGCAGCGGCACCTACTCACTCATTCGGACCACAAAGGTTTTAGCTGTGAAGTCTGTTCAAAACAATTTACAGAGAGGAGATACTTAGAGTCACATAGTTTTGTACACACGGGCATAAAACGGTACACCTGTGATGTCTGTTTCATGAAGTTCTCAACAAAAAGTGGTTTGAATCAACATAAACATACTCACACGGGCTACAAACCTCACAATTGTGATTTATGTTCAAAGTCTTTTTCGAGGAAGCGTCATTTGAGACTTCATGTTCACATGCATACCGGAGAGAAACCGTTTAGCTGTGATATATGCTTGAAGAAATTTACACGGAAAGAACTACAAGTTGAACTAGTACACAATGAAATTGAGAAAAAAACATATATCAAATCAGAATATGCACCAACATCAAAAGTTCTAGAAATCACTTTTGAGGTTAGTCAGAGTGAAATTGATGAACATGACCAATATCCCACAACAAGCTCAGGACACGCAAAAATAAAACAAGAGACAGCAGAAAATATAAGAGACGAAGGTCGACGAGAGTATCACGCTAAAGCAGCATGTCCCTCGGGCTCCCTGAGATCATATCAAAGGGTTTTTCGTGGTTGGATACCGCTGTCGATCCTGGCGACACAGGAGATATGGTGGGAATGGTGGGATATGGTGGAAATGTGTGGTGGGCCAAAGCCTGTTTAA
- Protein Sequence
- MLSAGCVISATQDCDNVTSCSSVLCRHEILLKMKSKIRTKNISITEPSLYIKRESDVKIEVCSDNELIVGLIDNDVEKKNSIKSEYAPTKKVLEITFEKVSESEIDEYDQCPTTSSGNTKIIKQERAENIRHEDDEENDTDQAQDASKAVVKKPHKCDVCCKRFSCKSLLLIHSRAHTGEKPFGCDVCPKKFSQKSHLIIHKRIHTGLKPFTCNVCSKSFSLKTHLNVHMRTHTGDKPYFCDICSKQYAQNIDLQRHLLIHTGNKAFSCEVCSKKFTQKRYLDIHSVVHTGIKRKSTSNTDVNEDILVERHSDIAQEKSQDAVEAPVASDEIELENVLPEMPDEDKSIELGGGENEQRVEERVNDDNEGEIIEQLARHEMRLRDRSLLRRPELQVELVENEADKKTSIKSEYAPTKKVLEITFEKVSESEIDEYDQYPTTSSGNTKIIKQERAENIRDEGEDQDKQNNVDQTQKASKAEAKKLHKCDITDVECWMCYICHTRLRQCQQLQQLAMQTRGATEILVHNKVKVGVYRSVLELSSSRTIIVSTTEPSLFIKQESDVKKEVCSDYELEAEFEGNEVEQKTNIKTEYAPTETVENTFEVSRSEIDEHDQYPTTSSGHAKIKQERAENIRDEGVDQIKQDTDKTQDACEAEAKKPHKCDVCSKRFPTKSQLVTHARTHTGEKLFSCDVCSKSFSHKYYLKRHIHSHSDDKPYFCDICSKQYKQKLDLQRHLLTHSDHKGFSCEVCSKQFTERRYLESHSFVHTGIKRYTCDVCFMKFSTKSGLNQHKHTHTGYKPHNCDLCSKSFSRKRHLRLHVHMHTGEKPFSCDICLKKFTRKELQVELVHNEIEKKTYIKSEYAPTSKVLEITFEVSQSEIDEHDQYPTTSSGHAKIKQETAENIRDEGRREYHAKAACPSGSLRSYQRVFRGWIPLSILATQEIWWEWWDMVEMCGGPKPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -