Lbel019113.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995334.1:10003663-10013756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.013 1.1 10.6 0.6 3 23 216 237 215 237 0.90 2 22 0.35 29 6.1 0.2 1 21 462 482 462 483 0.96 3 22 4.8 4e+02 2.5 0.3 1 22 525 546 525 548 0.82 4 22 0.041 3.3 9.0 0.8 3 21 559 577 557 578 0.94 5 22 0.21 17 6.8 0.0 3 23 587 608 585 608 0.89 6 22 0.085 7 8.0 0.1 3 23 628 649 626 649 0.96 7 22 0.004 0.33 12.2 1.7 1 23 655 678 655 678 0.95 8 22 0.063 5.2 8.4 0.0 1 23 701 724 701 724 0.90 9 22 0.013 1.1 10.5 3.4 1 23 729 751 729 751 0.97 10 22 0.003 0.25 12.5 0.0 1 23 757 780 757 780 0.96 11 22 0.0011 0.088 14.0 1.8 1 23 794 816 794 816 0.98 12 22 0.00013 0.01 16.9 1.8 1 23 861 884 861 884 0.97 13 22 0.00023 0.019 16.1 1.2 1 23 952 975 952 975 0.95 14 22 0.0032 0.26 12.5 1.4 2 23 1000 1022 999 1022 0.95 15 22 0.33 27 6.1 0.1 2 23 1028 1050 1027 1050 0.93 16 22 0.0035 0.28 12.4 0.5 1 21 1086 1106 1086 1107 0.94 17 22 0.0038 0.31 12.2 0.1 1 23 1117 1139 1117 1139 0.93 18 22 6.3e-05 0.0052 17.8 0.3 2 23 1230 1252 1230 1252 0.93 19 22 1.3e-07 1e-05 26.3 1.0 3 23 1259 1279 1258 1279 0.98 20 22 0.2 16 6.8 0.0 1 23 1320 1342 1320 1342 0.97 21 22 0.018 1.5 10.1 0.6 1 23 1348 1371 1348 1371 0.95 22 22 0.00013 0.011 16.8 0.8 1 23 1379 1402 1379 1402 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTGGATTATGATAGTGTTTGTAGACTTTGCTTAGCATCCGAACGTGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCCCTCGTCCTCGCATCGAAAATCAAAGATTGCGTGTCCATACAGATCGAGGAGAATGACGATCTACCGAGTAATATTTGCAAGAAATGCAATGATAATGTTAGTAACTGGGAGATATTCAAGGGAGTTTGTGAAAGAACACAAAATAAGCTTCTACAATTGAACAACAAAAAGGGCAGCAGCCAACTGGAAGAGTTGAATGTAAAAAGAGAGCCGTATGCAGATGAAGCCTATGACGATGGAGTGGTCATAGACGGCTCATATCCGGAGAGTGAGAGTGCTGAGGGATCAAACAAATTGCAACCCGAAGGTCCACCTATACTTACTTCTTTGGGATTGACGCCGAGGAGTGATAAGGGTGTGGATAGCGATAATAATTACGATGACGGCGAGGACGAGCCCGCTGATGATGAACACGACGACGAGCTGAAGCAGCGGAAACCGTACTCCGACATACCTAACATGCCCGAAGTCTCCATTACTGTCATGCGGCCCACGGGGGAGACGCTGCACGCAAGACAGGGGATCCAGCAGCTCGCCTCCAAGGACTGCCTCGTCTGCGGCCGCAGCTACAGGTACTCCCACAACGCCCGCCGACACGAACTAGGAGCGCACAACTTCGACCGATATACCAACAATCACCTCGCCCGGAAGTCCACCATGCAGCCCAAGCTCCGACCCAACCCCTTCAACCCCAAGGCGCGACTCATGCCCAACCCCATCAGCCACAAAATTCAGTATATGAACATGAGCATGGGCAAGCCTCTGCAGAGGAAGATCGCGCCCCAAAAAATGGTCGCCTGCCCGAAACCGATCCCGATAAAGAACGCCAAATCAAACCAAACTAATCTGCCGTACCCGCTCCGCATCAAGGCGCTGAAGGACCTTCAGATTAAGAAGAAGGAGCCCCAAATCCTGAAGACGCTTCTGACGTCGAAACCGGAGGTTCTGGTGTCGGAACCGGAAATAATGAATTCTGGCCCCGAAAGTCCGGAGACGCTGATATCCGAGCCGGAGATAGCGTCGTTCGCGGTCGAGACGATCCTGTCCGAGCCGGACGGGGATGCAGGCGGGGAACAGGACGACGACTACGACGGCGAGGAACGGAACAAGCGAGGAAACTACGACACAGTGGACATGGACTCCGAGAACGAGATAGAGATAGCGCGGCAGCGGCCCGACGACCACTACGACGGGGAGCAGAAGGAGGGCGACAAGGAGGAGGAACACCCCCGTCGGAAGGCGGTCATCCAGCACCTCCAGAAGAACGGCCACAAGGTCCCCAAGCACACCTGCTACAACTGCGTCGTCACCTTCGGCCACATCGGCGCCCTGCTCAGCCACATGCGGGCTAACCGCTGCACCGACTTATGGAAGATCATCTACGACGAGAACGGCATAACTGACGATCGCGTGATCGAGGACGAGCCGAAGGACAGCAAGGTCGCGTACAAGGACATATTCAACGCGAGGTCATACGCCTGCAAGCTCTGCCCGGCGAAGTTCCAGCTAAAGCAGTTCATCATGAAGCACGTCCTGGACGTCCACGAGGACGGGCAGTCGCGCGTGCAGCTGGCGTGCGTGCACTGCCGCTCGCGGTTTAAGGACAAGGCGCTGTGGAAGAAGCACATCCGCAACGGCGAGTGCACCGTGTACATCGCGTGCGACCTGTGCCCGGAGACCTTCATCACCGTGCAGGAGTTCAACGACCACGCGCTGGCCGTCCACGCCGGCCACTTCGACCCCGACAGCCAGAACAAGTGCGTCGACGGCCGCCCCACCGACTGCCCCCTCTGCGGGAAGAAGAACAGCGGCTACCCCAACCTTGTGAAGCACCTCAAGATCATCCACGACGAGGAGCGGCCGCACTACTGCCGGCACTGCGACGCCAAGTTCAAGGAGGCCGGCGATCTCAACGAGCACATCTACATGGAGCACTCCGACCGCTCCGGCCGCGCCGAGCCCGACGCGGCCCTCGTCAAGGAAGAGGCGGAGGAGTACCACTACTCGTGCACCGAGTGCGACGCGATATTCGAGACCGTCGACGCCTGGACCGACCACCAGGTCGCCGAGCACGACCAGATCGCGCACCACTGCGACCAGTGCGAGAAGAAGTTCCTCCGGCCGTCCGAGCTCGCCGAGCACAAGAACACGCACCTGCGCGTCAAGTTCTACCCGTGCTCGATCTGCGCCAACTCCTACAGCACCGCCTCCCAGCTCGCCGACCACGCGCAGCGAGCGCACGCCGGCGCCGCCCCCGCCGCCGCCCCCGGCGAGAACGTGTTCCACTGCGACGTCTGCGTGCGGGGCTTCAGGAGCCGCCAGGCCTACTCCAACCACATGCGCATCCACTCGAAGCTCCCCCAGACGAACCGGCGCGCGGACCGGTCGAGCTTCGCCCCGAACATCGTCGGGAAGCCGATCCTCCAGTACCCGCTGATGCAGCAGGGATTCGGGTCGAGCCTGCCCGTCCCCAACGCGCCCTACTCGTGCGACATCTGCGGCAAGGGCTTCATGCACAAGAAGAACATCTGGAAGCACAAGAAGGTGCTGCACGCCGACCTCGTCGTCGACCGCAACGACAGCGAGGAGAACACCATGCACGCGTCCACCGAGGACGACGAGCACAACGTAGACGAGAACGGCGCGCTCTCGACGCCGCAGTTCGACAGCTTCGACTTCGGCGGCCCGCCCGCCGCCGCCCCGCCCCGCCCCGCCGCGCCCCGCGCCGCCCCCCTGCCGCCCGACGCCATGCAGTTCGCGTGCGACCTGTGCTCCAAGCGGTTCCCCCAGCGCACGAGCCTGTGGAAGCACAAGCGCGCGAAGCACGGCATCATCAACGCCGCCGCCATCGGCACCGCCGACGTCCAGCCCGCCGGCGGTGAGGGCGGCGGCCGCTCCAGCTGCACCATCTGCCGGATAACCTTCGCCGACAAGAAGTCCTACTACCGGCACAGGAAGAACGTGCACAAGTCCACCGTGCAGATGTGCAAGCTGTGTGGGCGGGCGCTCAATTCGACGCTCGAGCTGTACGAGCACCTCAAGGCGGCGCACTCCCGCGAGCTACTTGGCGACACCGCCCCGCCGCCCGCTGCCGAGCGTGACGACGACGAGGCGGAGGACGAGGGCGAGCCCGCACGCGCCGACTATCAGGCCCACTACACCTGCGACACCTGCGGCAAGCGCTTCGTCGGCCTGCTCGCGCTGCAGAACCACAGGTGCGTCTCGGCCGTGCAGAACCAGCCGCAGACGTTCGACTGCGAAATCTGCCAGAAAAGCTACGTCTCCATCGCGGCGCTCAAGAGCCACCGCGGCTGGCACCTGCGCTCGCCGGACGGCAAGGCGGCTGCCACCAACTCCGGCCTGTGGATGCCGCACAACAAGGTCACCAGCAAGGTGAGCAAGTTCGAGGTGGTGGATGGAGGGGCGCGGGGGGCGGGCTCGCCGGCCGGCCCCGCCGCGCTCGCTAAGCGCCGCCTGCCACCCGAGGTCGAGGTCACCGTCGTCAACCCCAACAAGCGCATGCGGCCCGACGACATCGCCGAGCCTCCCGCGCCGGCCACGCACGCCGCGCCCGGCGGCGACGACCGCTACTGCAACATCTGCGACAAGGAGTTCACCAAGCGCGCCGCGTACCAGCGGCACATGGACGAGGTGCATCAGCCCAACTCCGTGTTCTGCCCCGTGTGCGACCGCAGCTTCACGCGCAAGTCGACGCTCATCGTGCACATGAGGAAGCACTACGAGGCGGAGGGGGGTGGCGGGGAGGAGGAGGACGACGGGGAGCCGGCGCACCGCGAGCACGACGACGAGTCCGGCGAGTCGGGAGAGGAAGGGGGGCGCGCGCCGCCGCCGGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGTGTGGCCAGCCCTCGCGACCTGATCGCGCACCGCGCCATGCACGCGACGCCCACTAAGTTCTTCTGCAACATCTGCAAGGTGTATTTCGCGCGGGCGCTCGACCTGTCCACGCACACGCGCGCGCGCCACGCCGACAACGACAAGGTGTTCTTCCCGTGCGCGATGTGCGACCGTTTCTACATGAATAAAAAGAGCCTGCAGCGGCACATCGAGACCTCGCACTGA
- Protein Sequence
- MSVDYDSVCRLCLASERELLPIFPTTSSDDSEPLVLASKIKDCVSIQIEENDDLPSNICKKCNDNVSNWEIFKGVCERTQNKLLQLNNKKGSSQLEELNVKREPYADEAYDDGVVIDGSYPESESAEGSNKLQPEGPPILTSLGLTPRSDKGVDSDNNYDDGEDEPADDEHDDELKQRKPYSDIPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELGAHNFDRYTNNHLARKSTMQPKLRPNPFNPKARLMPNPISHKIQYMNMSMGKPLQRKIAPQKMVACPKPIPIKNAKSNQTNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFAVETILSEPDGDAGGEQDDDYDGEERNKRGNYDTVDMDSENEIEIARQRPDDHYDGEQKEGDKEEEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANRCTDLWKIIYDENGITDDRVIEDEPKDSKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCRSRFKDKALWKKHIRNGECTVYIACDLCPETFITVQEFNDHALAVHAGHFDPDSQNKCVDGRPTDCPLCGKKNSGYPNLVKHLKIIHDEERPHYCRHCDAKFKEAGDLNEHIYMEHSDRSGRAEPDAALVKEEAEEYHYSCTECDAIFETVDAWTDHQVAEHDQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICANSYSTASQLADHAQRAHAGAAPAAAPGENVFHCDVCVRGFRSRQAYSNHMRIHSKLPQTNRRADRSSFAPNIVGKPILQYPLMQQGFGSSLPVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVVDRNDSEENTMHASTEDDEHNVDENGALSTPQFDSFDFGGPPAAAPPRPAAPRAAPLPPDAMQFACDLCSKRFPQRTSLWKHKRAKHGIINAAAIGTADVQPAGGEGGGRSSCTICRITFADKKSYYRHRKNVHKSTVQMCKLCGRALNSTLELYEHLKAAHSRELLGDTAPPPAAERDDDEAEDEGEPARADYQAHYTCDTCGKRFVGLLALQNHRCVSAVQNQPQTFDCEICQKSYVSIAALKSHRGWHLRSPDGKAAATNSGLWMPHNKVTSKVSKFEVVDGGARGAGSPAGPAALAKRRLPPEVEVTVVNPNKRMRPDDIAEPPAPATHAAPGGDDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLIVHMRKHYEAEGGGGEEEDDGEPAHREHDDESGESGEEGGRAPPPGEFTCAQCGDGVASPRDLIAHRAMHATPTKFFCNICKVYFARALDLSTHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -