Lmon036524.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991108.1:2657013-2691514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.68 74 5.3 0.2 1 23 312 335 312 335 0.93 2 12 0.3 32 6.4 2.1 1 23 343 365 343 365 0.95 3 12 1.7 1.9e+02 4.0 0.7 1 23 369 391 369 391 0.97 4 12 0.0004 0.043 15.4 0.1 1 20 397 416 397 418 0.94 5 12 0.0086 0.93 11.2 1.3 2 21 425 444 425 445 0.92 6 12 0.00019 0.021 16.4 0.6 2 23 461 482 460 482 0.94 7 12 0.00016 0.018 16.7 0.3 1 23 487 509 487 509 0.98 8 12 0.042 4.6 9.1 5.0 1 21 518 538 518 543 0.93 9 12 0.00018 0.019 16.5 2.1 1 23 551 574 551 574 0.93 10 12 0.016 1.8 10.4 0.2 1 23 580 603 580 603 0.87 11 12 0.021 2.3 10.0 0.4 3 19 616 632 614 633 0.89 12 12 0.0051 0.56 11.9 1.1 1 23 646 669 646 669 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAGATAAACATAAATATTGAAGGATATAACGTAAACGGTATTTGCGTTGGTTGCTTAAACTACAATCGACGTATGCATTATGATACggacataaaaaaatgtttcaaattACTCGCAGATATTGagGTGCCAGATGGTTTAGAAGTCCAAGTATGTTGGGAATGCCTCGCCTATATCAAGAAATCGATGATGTTCAGAGAACAAATATTGAAGTCTTATGAATTTCTTATAAGCTATTCCAGAGAAAGTACTTTTCTAGATTCTCCGAATGACTTTAAAGCTCGCGCAGTTTCGAGGTTAtcgaaaataatagaaataaacgaTTCAGAATTGTCTGTGAAACATTGCCAGGAGATTGAAATGAAGATAGAGGCTGAAGGGAATGCTCTTGATCTGGATACACCAAGGCCTGGTTCCCCGAAAATAACAAATTTGCGCGATTCGCAATTTCTTACGGACGATTGCAAGGATTTTGAATTAAAATCGGAAACTGTGGACAATTTTGATCTTGAGCTACCCATCAAATTGGAATCAGTTGACACTACAGAGGAAACCACCTTCGAAGATATATCTTTAACCAACGACCTAACATCAGATGAAGATATCCAGTTATCATTGCTTAAAGAAAAATCTAGAACTAAGAAGAAGAGGAAAAAGAAAGATGTGCAGGATTATAATTTCATAGCTGATTATGGTGATAAGACTGATAGAATTAAGAAAAGAAAACATAAGAAGAGGAAcgttaaagaaaaagaaattgagAATTCAAAATACATAGACACCGAATCAATTGAAAAAGACCAAAAGAAGAATAGAAGACTAAAGAATTTGCCTGAAGATATGGTGGAGTTGTATACAATGACTGAAGACGAAATGAAAACTGTCAGATCAGAAGATAGAGAGAGTAAGGAATTCTtgaaattgaaatacaaatgcgatgatTGTATCATAGGATTCAATACGGAGAAGTTGAAAGTGGAGCATATGAATGGAAAACACCAGCCGAAAGGTGAGATCTGCCATCGATGTCCGACCTGTCAAGGGTTTTTCTTAACCAAGGATAATCTTTCATATCATCGCGCTTTGCATCTGAACGCGTATAAATGTATGGTATGCGAGCTGAAGACGACTCTTAAGATGAGAATGTTGAAGCATGTAGCGACGCACAAGCATGTACAGCATTATGTATGCGATACATGCGGGGTTGAATTCAGTACAAAATCCAAATTGTCGTACCATAGAGCTGTATGCGCTCAAGAGAAACCACAGTGCGATTGTTGCGGGAAGGTCTTCGCCAATAAAATGACTTTGAAATACCATCTCAAACTCCTGCCGCAGAATAAGTCAGACAAACCTAAGGAAAAGCTATTTATACCATGCAAGGGTTGTGACAAAGTCTTTCATTCTAAAAAGAGTTACAGGGCACACGTGGTTATCCACGATGGTCTAACTTACCCATGTCCGATATGTGGCAAGCTGTTCCAATGGAAACGTAATCTGGCAAGGCATACACGCAACCATAAGGAGAAAGAAGCCGGTGAACTTCACGAATGCCGAGCATGTCGTAAAAGCTTCGCAAGTAGGGACTGTTACAATAACCACATGAGACTTAGTAAGAAACATGTTCAGGAAGATACATATCAACACGAATGCTCTTATTGCGGCAAGAAATACGCAACAAAATGGTGTCTAACCGATCATATTGATTGGGACCATTTGAAGAGGATAAAATATCAATGCAGTGTTTGTTTCAAGGCATTTAAAACGGCAAAGATAATGGTCGCCCACGTGAATAATATACATGAAggtagaaagaaagaagaagaggGCGAACACTTGTGTGAAATCTGTGGCAAATCATATAAGacAGTAAAACGTCTCAAAGGTCACGTATGGGCGATGCATACGAAACGTTCAAATACGAAAAGTTATAAGTGCAAGCTATGTCCAGCTACCTTCACTTGGCAGACTAGCATATACAAGCACATGAAGATGATGCATGATGCTAATAAAAAGACCAAGACCAACCGTACTATTCCACCAGTGAAAAAAGAAGATCCATTCCCGggaatcgaacttgcaaaccGTATGCAATACTTCCAACAGGAGATAGGAGGCACCACTGACCATGCTAATAAATGCtccatgtatttttatttaaaacaataa
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRRMHYDTDIKKCFKLLADIEVPDGLEVQVCWECLAYIKKSMMFREQILKSYEFLISYSRESTFLDSPNDFKARAVSRLSKIIEINDSELSVKHCQEIEMKIEAEGNALDLDTPRPGSPKITNLRDSQFLTDDCKDFELKSETVDNFDLELPIKLESVDTTEETTFEDISLTNDLTSDEDIQLSLLKEKSRTKKKRKKKDVQDYNFIADYGDKTDRIKKRKHKKRNVKEKEIENSKYIDTESIEKDQKKNRRLKNLPEDMVELYTMTEDEMKTVRSEDRESKEFLKLKYKCDDCIIGFNTEKLKVEHMNGKHQPKGEICHRCPTCQGFFLTKDNLSYHRALHLNAYKCMVCELKTTLKMRMLKHVATHKHVQHYVCDTCGVEFSTKSKLSYHRAVCAQEKPQCDCCGKVFANKMTLKYHLKLLPQNKSDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHKEKEAGELHECRACRKSFASRDCYNNHMRLSKKHVQEDTYQHECSYCGKKYATKWCLTDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHVNNIHEGRKKEEEGEHLCEICGKSYKTVKRLKGHVWAMHTKRSNTKSYKCKLCPATFTWQTSIYKHMKMMHDANKKTKTNRTIPPVKKEDPFPGIELANRMQYFQQEIGGTTDHANKCSMYFYLKQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -