Lmon032596.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991104.1:4059932-4078565[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.051 5.6 8.8 1.1 1 23 747 769 747 769 0.96 2 16 1 1.1e+02 4.7 0.0 3 23 799 820 797 820 0.92 3 16 0.34 37 6.2 0.3 3 23 842 863 840 863 0.91 4 16 0.00043 0.046 15.3 3.6 1 23 868 891 868 891 0.96 5 16 0.0035 0.38 12.5 1.2 1 23 896 919 896 919 0.96 6 16 1.8 1.9e+02 4.0 1.0 2 23 922 944 921 944 0.91 7 16 0.11 12 7.7 2.1 2 21 951 970 950 971 0.93 8 16 0.0083 0.9 11.3 0.5 1 23 1031 1054 1031 1054 0.93 9 16 2 2.2e+02 3.8 0.1 3 23 1083 1104 1081 1104 0.91 10 16 0.048 5.2 8.9 0.2 2 23 1127 1150 1126 1150 0.95 11 16 0.0024 0.27 13.0 0.5 3 20 1157 1174 1155 1178 0.90 12 16 0.025 2.7 9.8 0.3 1 23 1183 1206 1183 1206 0.97 13 16 0.002 0.21 13.3 0.4 2 23 1212 1234 1212 1234 0.94 14 16 0.00025 0.027 16.1 4.7 1 23 1238 1261 1238 1261 0.97 15 16 0.00033 0.036 15.7 0.6 2 23 1268 1289 1267 1289 0.96 16 16 0.0052 0.57 11.9 2.3 1 23 1295 1317 1295 1317 0.97
Sequence Information
- Coding Sequence
- atGGAGTTTAGTGAGATTGTTGTGAAAGAAAACCCGGGATTGTGCCGGTGTTGTCTTTCGGAAGGATGCTACAAAGACATGGGTTCGGAATATACTTGGATGAGTGAAAATGAAGTATACGCTGATATGCTACTGGAATGTTTCGATATTAGTATTACTCAACATAATGAAGGTCCAAATGGTATGAATCGTCTTATCTGCGAGGTCTGTATTACGAGGCTTCGAGATGCATGTAACTTCAAGAAACAAGTTCTGGACTCTGAAAAGAAATTTATTGATATGGTGGGTCGTGGAGACTTCCAGCCCAAGATGCTTGTTTATCAGACGCAAATGAAATGTGAAGATGCACCTGTGGAGGAAGCCATTGAAGAAACTGTCGAATACTTGGACGATATAGACTTTGTTGATGGATCTGGCAGTGGTTCTGGTGTAAGAGTAATCACTCGGAAGTACTTATTTGAGCAGATAAAAGCCCAAGATTTTTCAACTTTAGTTGAAAAATTAGACTCATATGAGAGTCACTTAATATCGGCATATGGAGAAACAGAAGACGATAAAAAGAGTTTGAAACGCAAATTTTCTTAcataaaatctcaaataaaacaaagatgGGCCAAAGCTCATAAAATAGAAGAAGTTTTTCTAAACCAAAATAAATCTTGGTTAGAAGGTACCTTTGAGATTCCGCTAGTATCACTTAAACGACAAGGTCGGCCATCTAAGAATTTTGAAGATTTAAGTGAAAGAAGCAAACGGAGAAAAACTGTAGTTGTTCGAGCTACTATGGGTGATGAAATCATTGTTCATGCAGCGCAGTCAGTACTACAAAAAAGTGGTAAACGAGACGCGTCAAAGTTGCTTAAAGATATAACAAATTCTCCAACAAGGGCCAGTGCATACAAAAAAGCCTACTCCAAGACAGATAAACTAATCGCTCCTCTTACCCAATTGCAAGcattaaaaatgtttgttgAAGCCGACCTTACTAGACgacaaaatgaaataattagagAAACAAACAAAAGTCATTACCCTTGTTATGACCTTTTGTTATCTGCAAAACAAGAATGTTATACACCAAAAGAATCCCTTCGTGTAACAGCTACCTGCGCCGAAAGTAATCTGCAGTCTTTATTAGACTTAACGGCCAGTCGATTGTCATTGTATTTAGAAGATGTACTAATGAcactcaatgaaatagaaaaacaaTCGTTGACCATAATAAGCAAATGGGGTTGTGACGGCTCACAACAACAGAGATTCAAACAAAGGTTTGATAACGATTTAGACTGCGACGGCAGCCTTTTCTTAAGCTCATTTGTACCTTTACAAATTGTTTGTGGAATAACAGGTAGCAAGATTATTTGGCAAAACCCGACTCCATCTTCGCCTCGTTTTTGCAGGCCAATAAGATTTAGATTCATAAAAGAGTCGACAGACGTAACTAAAgatgaaataaattatgtagAAAACGCAGTTAAGTCATTGAATGCTTCAAAAGTGACTCTGCAAGGAGAAGaatttactttcaaatataCCATGAAAATGACTATGATAGACGGGAAAGTATGCAATGCGGCTACAAATAATTCATCTACCAGTCGGTGTTATATATGCGGAGCCACACCAAAAAATTTCAATGACCTGGATATGAAGAATATTTTGTGCCCACAAGCACTAGAGTTCGGTTTATCGATACTACATGCCAGAATCCGAATCTTTGAATCAATTTTACATTTGGCATACAAGTTACCTGTAAAGAAGTACAAAGCAAGAAAAACGCAAGAAGAAAAACAGTTGgaagaaaaaagaaagcaaGAGATACAAAATCAATTTAGGATTCAAACTGGATTATTAGTGGACATGCCAAAAGCTCAATTTGGGAACACCAATGATGGCAACACCAGCAGGCGATTTTTTGAAAACCCAGAGCTAACCGCTGAAATCACTGACACGGAAGAGTTAAAAGATTCGTCAGCACCTACAGTATCAGACATTACAGTGAGCTCTCTACCCGTGAAAGGCAAGAGGGGTCGACCGAAGAAGAATGTTATGAAATCAGAGAAGAAGGCAAAGATTGCAAAATTGGATGAGAAGCCTAAAACCTCCAGGGCAGTCTCTAAAGATGTTAAAGCGAGGAAATACAAAGGCTGCGAATCGTCCTCGATGCGCAGACGTCGAAATCTCCAAATCCTTTTCAACAATACTACGATTATACCGTTTAAATGGCGCGGCAAATATCTTTGCTTTTATTGCAGCAAAGATATTGCTGAATATTCGGAGCTAAGAAAACATACTAAATCTCACGGCAATTGTTCAACTAGAGATCATtctttaaaagttttaaaaggTGGACAAAATATGGAAATCAAAATAGACGTATCAGATATTAATTGCGAAATTTGTGCCGAACCGTTTCCATCTTTCGATGAAGTCGTTAATCATTTATTTGTAAAGCACAAGTTAGAATATGACAAAGGGGTAGAAATGGCTATTGAGGAATATAGACTTATCGATCTTAATTGTATGGCTTGTGATGAAAAGTTTACTTATTTCGGTTATCTAGTCTCACATGTTAACAATACTCATccgaaaaaatgttttatatgcgATAAGTGTAAtcagaaatttaataaaaagagaGATCTTTTTTCTCATATGAAAAACTATCATAGAGAAGGTGGATACCAGTGCGAATTGTGTCCACAGACTTTTACATcgttaaatatattaagaaaacatagGAACAATAGGCATTTGACTAGGTGCAATATTTGCCATTTAAAATTACCATCAGCcactttaaaacaaaaacatttagaTTTAGAGCATCCAGATGATGGATCTCTACAATGTGACACATGTTTCAAAGAATTCCACACCAAGCAAGGTCTTCGAATGCACAACAGAAAGTGTAAAGGCGCTGATATTTTCGAAATTGCAATTAAGAAAGAAGAATACGTTGCTATGGATTTGGATCAAAATTACGATGATCATACTAAAAGGCCAAGTGTGAAGCAGATCCGCGAAAATATCGTCATAGTCATAAACATGTCCACAGCTATACCgtttaacttttataaaaataaatttaattgcttttattgttcaaaaGATTTCGCTGATTCGGATTTGATGAGGGAGCACACTATTTTAGAGCATCCTATATGTGATATCAAACAGAAATGTATCAGAAAATGTAGGGAATCAGTGGCTTGCGTCAAAATTGATATATCTTCTCTAGCTTGTAAAATATGCTTTGAATCAATGAGTGGTTTGGATAATCTACTTGATCATTTAATTGCCAAACATGACGCCAAGTATGATAGGTCAATAACTACATGTCTACAACCATACAGACTAATTAAAGACCATATGGTTTGTCCAAATTGTCCTGGCGAAGTCTTTAGATTCTTTGGCACTTTACTTAAACATATGAAtaaaaaacatacaaacaataatattatttgcgtTTACTGTGGCCAAACATTCCGTAGAGATCAGAATCTTCGCGTGCACGTATGGAGACATCATCGGGATGGAAGGTTTAAATGTAGTATATGCGGTGCTGAGTGCAATATTCCGTCCAGACTTTACATGCACATGGCCAAAGCACATGGCGTTAAAGCGGCTAAATGCTCGAAATGTCCCGAAAGCTTCGCAACACAGTATTTAAGGCAAAAGCATTTAATAGAAGCTCACGATTGCGGTCACAAATGCTCTTATTGCGGCAAACTTTTCACTAGGAACTCATTTATGAGAGATCATGTTAGAAGAACACATTTAAAAGAGAAAAATGTGGAATGCtctatatgtaatatgaagttttttaataatatccttCTGAGGAGACATATGGTTAAGCATAGTGGGGAGAAGAATTTTCACTGCGATATTTGTGGAGAAAGATTTTTCTGGAGGAAAAGTCTTAGAACGCATATGGCCAGGCATAATAAACATCTTAATCCTATATTGAGTTGTTAA
- Protein Sequence
- MEFSEIVVKENPGLCRCCLSEGCYKDMGSEYTWMSENEVYADMLLECFDISITQHNEGPNGMNRLICEVCITRLRDACNFKKQVLDSEKKFIDMVGRGDFQPKMLVYQTQMKCEDAPVEEAIEETVEYLDDIDFVDGSGSGSGVRVITRKYLFEQIKAQDFSTLVEKLDSYESHLISAYGETEDDKKSLKRKFSYIKSQIKQRWAKAHKIEEVFLNQNKSWLEGTFEIPLVSLKRQGRPSKNFEDLSERSKRRKTVVVRATMGDEIIVHAAQSVLQKSGKRDASKLLKDITNSPTRASAYKKAYSKTDKLIAPLTQLQALKMFVEADLTRRQNEIIRETNKSHYPCYDLLLSAKQECYTPKESLRVTATCAESNLQSLLDLTASRLSLYLEDVLMTLNEIEKQSLTIISKWGCDGSQQQRFKQRFDNDLDCDGSLFLSSFVPLQIVCGITGSKIIWQNPTPSSPRFCRPIRFRFIKESTDVTKDEINYVENAVKSLNASKVTLQGEEFTFKYTMKMTMIDGKVCNAATNNSSTSRCYICGATPKNFNDLDMKNILCPQALEFGLSILHARIRIFESILHLAYKLPVKKYKARKTQEEKQLEEKRKQEIQNQFRIQTGLLVDMPKAQFGNTNDGNTSRRFFENPELTAEITDTEELKDSSAPTVSDITVSSLPVKGKRGRPKKNVMKSEKKAKIAKLDEKPKTSRAVSKDVKARKYKGCESSSMRRRRNLQILFNNTTIIPFKWRGKYLCFYCSKDIAEYSELRKHTKSHGNCSTRDHSLKVLKGGQNMEIKIDVSDINCEICAEPFPSFDEVVNHLFVKHKLEYDKGVEMAIEEYRLIDLNCMACDEKFTYFGYLVSHVNNTHPKKCFICDKCNQKFNKKRDLFSHMKNYHREGGYQCELCPQTFTSLNILRKHRNNRHLTRCNICHLKLPSATLKQKHLDLEHPDDGSLQCDTCFKEFHTKQGLRMHNRKCKGADIFEIAIKKEEYVAMDLDQNYDDHTKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHTILEHPICDIKQKCIRKCRESVACVKIDISSLACKICFESMSGLDNLLDHLIAKHDAKYDRSITTCLQPYRLIKDHMVCPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHVWRHHRDGRFKCSICGAECNIPSRLYMHMAKAHGVKAAKCSKCPESFATQYLRQKHLIEAHDCGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKSLRTHMARHNKHLNPILSC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -