Lmon032668.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991104.1:4767109-4773786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.75 81 5.1 2.3 2 23 122 144 121 149 0.92 2 17 0.0013 0.14 13.8 2.1 2 23 167 188 166 188 0.96 3 17 6.6e-06 0.00072 21.0 0.6 1 23 192 214 192 214 0.98 4 17 0.0029 0.31 12.7 1.2 1 23 219 242 219 242 0.97 5 17 0.29 31 6.5 0.1 2 20 250 268 250 272 0.80 6 17 0.0045 0.49 12.1 1.1 1 23 279 302 279 302 0.96 7 17 0.0013 0.14 13.8 6.0 1 23 308 330 308 330 0.96 8 17 0.00014 0.016 16.8 1.4 1 23 336 358 336 358 0.98 9 17 0.004 0.43 12.3 0.2 1 23 412 438 412 438 0.95 10 17 5.6 6.1e+02 2.4 0.5 3 23 468 489 466 489 0.89 11 17 0.023 2.5 9.9 0.4 2 23 510 531 509 531 0.96 12 17 0.82 89 5.0 0.4 1 23 535 557 535 557 0.94 13 17 0.061 6.6 8.6 0.9 1 23 562 585 562 585 0.94 14 17 0.42 45 5.9 2.3 1 23 591 614 591 614 0.91 15 17 0.035 3.8 9.3 3.9 2 23 622 644 621 644 0.95 16 17 0.00018 0.02 16.5 0.5 1 23 651 673 651 673 0.98 17 17 2.6e-06 0.00029 22.3 2.3 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGTTCTTTGCATCTGACActactacatataaatataagacaataattaaagaggaaCCTATTGTTGTAGATGACCTGAGGACATCGCAAAGACATTCGCAAATGAAACAAGATGGTAAAGTGAATAGCCgtgagattattttaaaattcaaggATAACGCGCGGAATATTCTAGAAAATTCGAATGCGACACCTATCAAAGGCCATTGGGGTATTGGATACGGGTGTTTATGCTGTTCCTATCAGAACCCTACGCCGGCTATATTAAAAACACATACACTCAATAAGCATGCAGACATTTTAGAAGGGTTTAAATTCACTAGTCATATGGATCTAATCATGAAATTGGATATCACTGGGCTTCAATGTAAACTATGCGGAGAAAATTTATCACTTTTAAATGAATTCACTGCACATTTAGATCTTTGCCATCATATAACGCTACATACGGACATAGAAGAACAAATAATACCTTTCAAATTTGACACAGAAGAACTCCGCTGTGCAATTTGCTCAAAACCGTTTGAATACTTTAAGCATTTAATAGAACATATGCACGTACATTATAGAAATTACGAATGCGATGTATGCGGCCGTGGATTCATTAATAAAAGAGCATTAAAAACACATCAATTTCGTCACAAAATTGGCGTCTTCTATTGTTCATTTTGCGCTAAGGTATTCAATACAAGAGTTAAAATGAAAGAACACGAAAGGGTGCTTCATAAAAACTCATCTAAAACACGTAAATGCGGATATTGCGATGAAAGATTCATAGATCCGGTTTGGAAAATTTATCACGAGGTGTCCGTACATGGAGCACCGAAGCCATCTTACGAATGCAAAGCTTGCGGTAATACTTATGATACAAGAAGAGCTTTGAAAACTCACACGAATCAATATCATTTGATGTTAAAGCCCCACAAATGTTCTGAATGCGGCAAAGAGTTTCATTTTAAGAATGAGCTAACGAGACACAAGGTGAAGCACACCGGTCTGAGGGAGTTTCAATGTGAGATATGTCAAAAATGGTATAAGTCGCGGAAAACTTTGACAGCGCATatgaaattacattttaatgatAACAAGATGCATATAAAAAGTTTGGAAGAAGAAAATGTCATGACCGatgaaaagcaattaaaaagagAGAAGATGTTTCAATTGATAAAAGAAATCAAATTAATTCTAACATTCACTAACGCGACACCTTACAAGACGAAAGCAAATAGATATCTCTGCCCATACTGCTCAACCGAGAGCCAATTCTTCGAAGATCCGGGTGAACTTAGAACTCATATAAGAACTCAACATGTTGTCGACAGAATCCAGAAAATTGATTTCATTATGCGACCACATTGGCTTAACGAAACTATGAAACTGGatatcaataatttaatatgcAATGTATGTTGTGTCCCAATTTCCAATTGGAATGATATGTTCAGACATTTGAAAGAGCAGCACAAAGTATTTTTGGACCAGGCGTACACCAGAGCGATACCTTATGACTTGTCGGATGAACTAAAATGCGTCCTCTGTAAACAGGAGTTTACTTATTACATGCTCTTGGATAGCCATATGAATGCCCATTATAGTAATTATGTCTGTTTTGATTGTGGTGATACATTTCTTGCTGAAAACAGGCTGAAACAACACGTCAAAACACATGATACTGGAAGATTTGCGTGCAGTTTTTGTCCAAAAGTTTTCGCAATGTTCAAATATAAAACCAAGCATGAGGAGACTGTACATAAACATCTGCCTAGATACAGATGTCAGTTCTGCGATGCACGTTTCACTGGTGAATATTTGAAACATCTACATATGCTCGATAAACATAACGAGAAAGTCAAAACTATTCATTGCGAATATTGCTCCAAAACTTTTACTTGGAGACAATATTACTTGAAGCATATTAAGAAGAAACATAACACAGACGGTAAAAAATTTGAGTGTAGGGAATgcggtaaaaaatattttttaccgatACAATTGAGGGAGCATATGTTAAGGCATACTGGTGAGAAGCATTTTACATGTCCGATTTGCAATAAGAAATATGTTTCTTCTGGTTCTTTGAAGCATCATCTAAATAGGCATAAAAAAGTTTGGGGAGATTTGCATTCGATTACCAAAGTGAATGATTCTGAGGAGATTTATGAAGTTGCTGTTATAGAAAATGTGGATGTGCCTGTTATTGAATTAGTTAATGGATAA
- Protein Sequence
- MFFASDTTTYKYKTIIKEEPIVVDDLRTSQRHSQMKQDGKVNSREIILKFKDNARNILENSNATPIKGHWGIGYGCLCCSYQNPTPAILKTHTLNKHADILEGFKFTSHMDLIMKLDITGLQCKLCGENLSLLNEFTAHLDLCHHITLHTDIEEQIIPFKFDTEELRCAICSKPFEYFKHLIEHMHVHYRNYECDVCGRGFINKRALKTHQFRHKIGVFYCSFCAKVFNTRVKMKEHERVLHKNSSKTRKCGYCDERFIDPVWKIYHEVSVHGAPKPSYECKACGNTYDTRRALKTHTNQYHLMLKPHKCSECGKEFHFKNELTRHKVKHTGLREFQCEICQKWYKSRKTLTAHMKLHFNDNKMHIKSLEEENVMTDEKQLKREKMFQLIKEIKLILTFTNATPYKTKANRYLCPYCSTESQFFEDPGELRTHIRTQHVVDRIQKIDFIMRPHWLNETMKLDINNLICNVCCVPISNWNDMFRHLKEQHKVFLDQAYTRAIPYDLSDELKCVLCKQEFTYYMLLDSHMNAHYSNYVCFDCGDTFLAENRLKQHVKTHDTGRFACSFCPKVFAMFKYKTKHEETVHKHLPRYRCQFCDARFTGEYLKHLHMLDKHNEKVKTIHCEYCSKTFTWRQYYLKHIKKKHNTDGKKFECRECGKKYFLPIQLREHMLRHTGEKHFTCPICNKKYVSSGSLKHHLNRHKKVWGDLHSITKVNDSEEIYEVAVIENVDVPVIELVNG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -