Lmon021431.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991095.1:19675568-19677223[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.9 5.3e+02 2.6 2.0 3 23 233 254 231 254 0.89 2 10 2.5e-06 0.00027 22.4 0.8 1 23 260 282 260 282 0.99 3 10 0.00045 0.049 15.3 7.0 1 23 288 311 288 311 0.96 4 10 0.006 0.66 11.7 0.2 2 20 318 336 317 338 0.94 5 10 3.3e-06 0.00036 22.0 3.3 2 23 360 381 359 381 0.96 6 10 1e-06 0.00011 23.6 3.2 1 23 388 410 388 410 0.98 7 10 6.2e-05 0.0067 18.0 0.5 1 23 416 438 416 438 0.97 8 10 8.1e-06 0.00089 20.8 2.1 1 23 444 466 444 466 0.96 9 10 2e-05 0.0021 19.5 4.0 1 23 472 494 472 494 0.98 10 10 9e-06 0.00098 20.6 3.8 1 23 500 523 500 523 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAAGAAGAAGATTCATACTGTCGCTTATGTGCTGAACCAACACCGACAACCCAATTGATAGCTCCAGATGATGATGTTGGATTAAATTCCAAAATAGCTACAAAAATGTTATGGATTAATATCGATGTTTCTACGACAAACAGCCTTCCAAATTCTATATGCTTCTCATGTTTCGACTTATTAGAACGTACGTGGTCGTTTTTACACAACGTTAGGACAgcacaaacaaaattaaatgagATATTTCCAAAAAAGTCAGAGGCAAAAGATACATCTTCTAACATTAAAGCAGAACCTGATGTCAGTgctgaattaattaaaaacaatgaaaacaCATCATCTAATTCGAAAACAGATGATATTACAGGTAAACCTGTTAATCAAGATTGGGAAATGTTCGAAGATTTGAAACAGGAGGTAAAACCAGAAATCCCGAATGAGGAATTACAAATAACGACAGTAGACCCGAGTACTTTAATAGATTTAGACGCTGTTAAAGCTGAAAATCATAGTGATGATTATATACCAGAATCTGATGGATGTAACACCACAGACAGTGATATACCACTATATCTTAcaagtaaaaagaaaaacaagaagaaaaaaaaattaaaagaacataacaatattaatattttaaatgagtcCGATGAATTAAGTTCACCGACTTGGGCGGATTGCATGTGTCTATGCGCAGATTGCGACGcacaatgtaaaaatataatgtcattACGACTGCATTCATTACAAATACATACTCGCTGCTGTCTATTTAAATGTTCAGACTGCGGcaaagttattagtaataataaatcatttataaatCATGTGAGAACACATAAAAAAGGTTTGCGGTACTGCTGTGAGTTTTGCAATAAACGTTTTATAAATTCATCATACCTCAAAAACCATCATAGTAAAATACATAAAGAAACATATGCCACAACATGTCACAATTGCGGTGCAAGTTTTGAAAGTATCGAACAACTCCACGATCATATTGTTTTATATGCAAGAAAGTTGAAAAGGAGAACGATGAAATCGGAGAAATGCGATTTTTCAGATGatttaaaatgtgagcattGCAATAAAGAATTTAAATCGCGTAGCAATCTTCAgcaacataaaataatacacaTGGATCGTAGCAGAGATTTCTCTTGTCATGTATGCGGTAAAATGTTCTTCACAAAAGGCACATTAAGTACGCATATGATGACACACGATGAAAGCAAACCATTCAAATGTGAATTCTGTCCATTGACATTTCGTGCGCGAGGTAATTTGCAATCGCATATTAGCCTTCATTCTGGTGCTAAGCCGTTTGTGTGCGAACAGTGCGGCAAAAGTTTTCGTGTCAAACGTCATTTGAAATCACATTCCATAATTCATACAGACTTGATGCCTTacgaatgtaattattgtaataagaCTTTTAGATTTAAAACACGTTTGAATCTTCATTTGCGTCAACATACTGGAGCTAAGCCTTACAAATGTGTTTACTGTCAACGGGACTTTACGAATGGatctaattataaaaaacatatgaGACGTAAACATAATATTGATACTTCCAGAAAGAAATATAGCAACATTGTAACTGAACGTAGTTTAGAAAAGAGTGATATTGAGCGGAGTCAGActtaa
- Protein Sequence
- MSEEEDSYCRLCAEPTPTTQLIAPDDDVGLNSKIATKMLWINIDVSTTNSLPNSICFSCFDLLERTWSFLHNVRTAQTKLNEIFPKKSEAKDTSSNIKAEPDVSAELIKNNENTSSNSKTDDITGKPVNQDWEMFEDLKQEVKPEIPNEELQITTVDPSTLIDLDAVKAENHSDDYIPESDGCNTTDSDIPLYLTSKKKNKKKKKLKEHNNINILNESDELSSPTWADCMCLCADCDAQCKNIMSLRLHSLQIHTRCCLFKCSDCGKVISNNKSFINHVRTHKKGLRYCCEFCNKRFINSSYLKNHHSKIHKETYATTCHNCGASFESIEQLHDHIVLYARKLKRRTMKSEKCDFSDDLKCEHCNKEFKSRSNLQQHKIIHMDRSRDFSCHVCGKMFFTKGTLSTHMMTHDESKPFKCEFCPLTFRARGNLQSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIIHTDLMPYECNYCNKTFRFKTRLNLHLRQHTGAKPYKCVYCQRDFTNGSNYKKHMRRKHNIDTSRKKYSNIVTERSLEKSDIERSQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931786;
- 90% Identity
- -
- 80% Identity
- -