Lmon028154.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991100.1:28258429-28264904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.6e+02 4.2 2.2 3 23 245 265 243 265 0.95 2 13 1.1 1.1e+02 4.7 1.3 3 23 307 328 305 328 0.93 3 13 1.7e-06 0.00018 22.9 0.7 2 23 351 372 351 372 0.97 4 13 5.9e-06 0.00064 21.2 1.9 1 23 379 402 379 402 0.96 5 13 0.043 4.6 9.1 0.1 3 23 410 430 409 430 0.96 6 13 2e-05 0.0022 19.5 2.2 1 23 436 458 436 458 0.98 7 13 6.2e-05 0.0068 18.0 5.1 1 23 464 486 464 486 0.99 8 13 1.7 1.8e+02 4.0 0.3 3 23 524 543 524 543 0.92 9 13 2.9e-07 3.2e-05 25.3 0.5 1 23 549 572 549 572 0.98 10 13 0.0015 0.16 13.7 4.4 1 23 578 600 578 600 0.98 11 13 3.2e-06 0.00034 22.1 0.1 1 23 606 628 606 628 0.99 12 13 5.6e-06 0.00061 21.3 0.1 2 23 634 655 633 655 0.96 13 13 0.00043 0.047 15.3 0.9 5 23 664 682 662 682 0.96
Sequence Information
- Coding Sequence
- ATGAatgaaactcaagaaatatttgCACATAATGCAGGATTTTGCCAACCATCAACATCAGGAACAAAATCGACAAGTGCACAAGTTAACCTCGAGAATGTGCAGGATTTTTCAAATGTATGTCGGACGTGTGCAACAATTACAGAGTTTGTTATACCAATTTTTGCTGGTGAAGGTTTACAGAATAACTTAGCTGacaaaatacatacacatcTACCTATAAAGGTCACAGAGGCGGATGCACTACCCCGTGTTGTATGCTACCAGTGTGCTAGCACGCTGCTGGCGTGGCACGAGCTTGTCGCGTGCTGCCGCCATGCTGATGCCGCGTTGAGGACACGCCTTGCAGCTGATCCCTCTCTACAGACTGATAAGgaacCAAAACCATCCAATTCGAAAACAAGTTCGACATCAGAAGAAGATGCACAGAGCAAGTCATTTTACATCAATGTTCAAAATGTTATAATCGATTACTTTCCAAAGTTGAACATAAAAGACAATTTGGATGTGGAATTTGTTTGCCAAAAGTGTATGGAGAAACCTATGTTGTCCACAGTAGAAAGTTTGAGTAACCACTTGAAATACGACCACAATTCTGATGTGAATGATGAGAAATCTATTAAAACGTTCATAAAAAATTATGTAACATTTGAGGAAGCATTAGATTCCGAGGACTCTGACAGGGACGACCAATCAGATGTTGTAACAGAGAAGGCATTACCAAATTTATTTTGTCCATTTTGCTCTAGTGTCTTTACTTCGCCTACAAGATTACTATGCcatcttaataaacatttcgaAGTGTGCATTGAGAATGGTACTAAATGCTGTGATGTTGTGTATAGCGACAAGAAAATTTTCATCAAACACTTACAAGACGCTCATGTCGATAGAATTGTAGAGGACACGCTAAAGGTATGTAAATGTTGTGGATTCACCGCAGAGAACGTTGACCAATTGCAGTTACATATAAACAAGAGACATGTTAAAAAGATAATAGATAGAGAGAAAAAGTTACAAAGTCCGTTAAACCAGAAGTATATACCAGCGGTGTGTCCAGAATGTAATAAAACGTTTTCCAACAAATACGCCATGTTTGTACATATGAAGAATCACAGTGGCGATGTGAATTTGTACTCTTGcgagaaatgtaataagacCTACAAAAATCGACAGAATTTAAACAATCACGTTAAATTAGTGCATGAAGGCATGCTAAACGTGTTATGTTCTGAATGTGGTGAGGCGTTTCCGACTCGGACCGCTCGTGATGTTCATGCTCGATTACATTCAGGCCTTAAACCCTACAAATGCGATTACTGCGGCAAATGTTATCGCGCCAAAAATACACTTGATAGACACATAGAAATACACCTTGACATTAGAAAATATGAATGCCAGATTTGTTCCAAAAAGTTCAGGAAGAAAACTCACCTCGATTACCACATTAAGACGCACAGCAAAGTGTATACGAGGATCAAATCCGAAGAGAGGGAAGCTGAAATATCGAAAGTAGTAATCAAAATCGAGCCCAGTGAGTTAAGTAAAGATGGCAATCGCACATCGTGGTGTGGTATCTGCAGTAAAAGCGTTTCCACGGTCTACTGGCGGAGGCATGCACGATTACATAGTGGTGAAAGACGCTACAGCTGTCATACTTGTGGACGAGCTTTCGCTGATAGTGGGAATTTAGCTAGGCACGTGAAGACTTTGCACACGCAATTAAAGCCATTCTCGTGCCCCACTTGCCTCAAAACGTTTTCTCGAAGAACTCATCGCAATGACCATGTTAAATCACATTCGGAAGAGCGTTCATATGTGTGTGACATATGTGGAAAGGCGTCTAAGTCCAGTGCAGCTTTACGCATGCATACACGCACGCACGGTGCACGAACGTTGTCGTGCCTGGATTGTGGGGCAACATTTAAACGAAAGGCTGAACTTCGTGCACATATAAGTGTACACACGGGGGAGAGAGCTCATGCTTGTACATGCGGGAAAACGTTTAGACTACGCAGTCAACTTAATTCACATGCACGAATACATCAAAAGATTGAAATGTGA
- Protein Sequence
- MNETQEIFAHNAGFCQPSTSGTKSTSAQVNLENVQDFSNVCRTCATITEFVIPIFAGEGLQNNLADKIHTHLPIKVTEADALPRVVCYQCASTLLAWHELVACCRHADAALRTRLAADPSLQTDKEPKPSNSKTSSTSEEDAQSKSFYINVQNVIIDYFPKLNIKDNLDVEFVCQKCMEKPMLSTVESLSNHLKYDHNSDVNDEKSIKTFIKNYVTFEEALDSEDSDRDDQSDVVTEKALPNLFCPFCSSVFTSPTRLLCHLNKHFEVCIENGTKCCDVVYSDKKIFIKHLQDAHVDRIVEDTLKVCKCCGFTAENVDQLQLHINKRHVKKIIDREKKLQSPLNQKYIPAVCPECNKTFSNKYAMFVHMKNHSGDVNLYSCEKCNKTYKNRQNLNNHVKLVHEGMLNVLCSECGEAFPTRTARDVHARLHSGLKPYKCDYCGKCYRAKNTLDRHIEIHLDIRKYECQICSKKFRKKTHLDYHIKTHSKVYTRIKSEEREAEISKVVIKIEPSELSKDGNRTSWCGICSKSVSTVYWRRHARLHSGERRYSCHTCGRAFADSGNLARHVKTLHTQLKPFSCPTCLKTFSRRTHRNDHVKSHSEERSYVCDICGKASKSSAALRMHTRTHGARTLSCLDCGATFKRKAELRAHISVHTGERAHACTCGKTFRLRSQLNSHARIHQKIEM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -