Lmon032682.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991104.1:4832181-4836412[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.39 43 6.0 0.0 3 23 62 83 60 83 0.94 2 24 0.083 9.1 8.1 6.4 1 23 105 127 105 127 0.95 3 24 0.00025 0.027 16.1 0.2 1 23 131 153 131 153 0.98 4 24 0.25 27 6.6 0.3 1 23 158 181 158 181 0.92 5 24 0.00031 0.034 15.8 1.6 1 23 187 210 187 210 0.96 6 24 0.082 8.9 8.2 1.2 1 23 217 240 217 240 0.95 7 24 0.00065 0.071 14.8 1.9 1 23 246 268 246 268 0.95 8 24 0.025 2.7 9.8 0.4 1 17 274 290 274 290 0.93 9 24 0.002 0.22 13.2 1.2 1 23 347 369 347 369 0.93 10 24 2.1 2.3e+02 3.7 0.1 2 23 398 420 397 420 0.92 11 24 0.019 2 10.2 0.4 1 23 442 464 442 464 0.98 12 24 0.0014 0.15 13.7 0.2 1 23 468 490 468 490 0.95 13 24 0.036 4 9.3 0.9 1 23 495 518 495 518 0.95 14 24 0.00098 0.11 14.2 2.5 1 23 524 547 524 547 0.96 15 24 0.068 7.4 8.4 0.2 1 11 554 564 554 568 0.89 16 24 0.014 1.5 10.6 0.5 1 23 679 702 679 702 0.97 17 24 0.42 46 5.9 0.1 2 23 727 749 726 749 0.94 18 24 0.24 26 6.7 0.1 1 23 773 795 773 795 0.96 19 24 0.00081 0.088 14.5 0.2 1 23 799 821 799 821 0.98 20 24 0.0002 0.021 16.4 0.8 1 23 826 849 826 849 0.96 21 24 0.0092 1 11.1 0.4 2 23 856 878 856 878 0.93 22 24 0.075 8.2 8.3 6.4 1 23 885 908 885 908 0.96 23 24 2.1e-05 0.0023 19.5 2.7 2 23 915 936 914 936 0.96 24 24 0.0002 0.022 16.4 1.7 1 23 942 964 942 964 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTACTGCTTACCCATTCAAATATAGGAAAGGAACTTACTTATGCTTCTTTTGCAGAAGTACATTTTTAGAACCCGAAAAATTGAGGGAACACAATCATTTTCAGCATGCAGAAGTTAAACACCTTAAACCACGAAAATATGAACCATTAAAAATGGATTTTGCCACAACAATATGTAAGTTATGTGGTATCAATATTGATGATTATGCGATGCTCAAAATTCATTTAACCGTTGAACATGGAAAGATTATAGATAGCACTTATGGTGATAGTGTTTTGCCTTATAAGCTGAGTAAAGAAGAACATTGTTGTCAGATATGTGGTAAGACATATGAAATGTTCTTGAGTTTACACAAGCATATGAATGATCATTACGAACATTATATTTGTGAGACATGCGGTAAAGGATTTGCAACCTCCCAACGAATGGTAAACCATGCTAGAACACACGAAAGAAGAGATTTCCCTTGCAAAAAATGTACAGACATGTTTCCATCCTACGCATCATTGTATGCTCATAACGCAAAAATCCACAGATCGAATAAAAGATACAAATGTCCTATTTGCGATGAGAAATTTGCTTCGTATAAGCATAGGCTTAAACATTTAAAAGCTATACATGGAGAAAAGACTGCTGTATTTCCGTGTCCATCTTGTCCGAGAGTATTCGACCTCTGTAGCAGAAGAACAGCGCATATACGATTCCAACATCTTCAAGAGAGAAAACATATGTGTTCTATATGTGGAATGAAATTCTTTACAAACTACGAATTGCAGGAGCACTCTATCAAGCATGGTGGTGAAAGAATATATCAGTGTGATGTTTGCAAAAAGTCATATGCAAGATTAAAAACTTTGCGTCCTACACCACGTCAGGATTTCcttaaagaaaataatggtGAAACTGCGGCCCAGCTTGCTGAAAGAACAAAAAATTTCACAGACGATGATATAAAAGTTAGGAAGCGTCATGCCGTTATTCTACTAGAGGCCTCTAACATTTGCCCATTTAGATGGACAAAGAATCTTTATATTTGCTTTTATTGTGATGAGCAATTCTCTGATCCTAAAAAACTAAGACTACATAATACGCAGCACCGGTCTTTGTCTAATATTCAAATAAGACACACATTgtcaaaattaagaaaatacgaGTTAGTGAAAGTAGATGTTACTGATATCCAATGCAAGCTGTGTGAAGAGTACATACCCGATTTTCCATCTTTAAAGTGGCATTTACTTGAGAGACATAAAAAGAATTTGGATCCTAAATCTGCTGATGGCGTATTACCATTCAAAATCACTATACATGAGTTTCAATGTGCGTTGTGTGTAGAAAAATACGAAGAATTTAAATCCTTAAATCAACATATGAATGtgcattttcaaaattttatttgcgAACAATGTGGCACAGGTTTTGTGACACCCGAAAGATTAAGGACTCACGCATTTTCACACGAAACAGGTTCATTTCCTTGTGATAGCTGCGATAAAATCTTCCGTTCAACTAACGCAAAAAATGAACATCATGCCACTGTGCATATGAAGGTCAAACGTCACAGGTGTCCCCAATGTCCTGAGACTTTCAGAAACTACTTTCAACGTAACAAACACATTTCCTCCATCCAcggattaaaattaaaagaatttaaaTGTACCATGTGTCCTAAAGTCTTTACTTTAAGTGGATGGGACTGGTCAATAGCGGACTCCAAGCGAAGAATAGTGCCGCTATTTCAAGTAGCATACGACAGAAGCCTGTGTAGACCATTGGGCACTTTAGTGGACTTCAGTTTACTCCCAAgaccttttaaaaaatattctatacagTTCGAACCATCTCGAAGTCCGTCGCCTGTTTATATGCCAAGATCTCCGTCTCCTTTAGTTGAAACTTTTAGAAGAGCTCCATTGATTGCAACTATCGCATCTAAATCCATCAAAAATCCAAATTGCAGGCAAAATGCTTTAACTGTATTTGAATTCTCAACAGTATATCCCTTTGTCTACgggaataataaatttaaatgttttgtttGTTCCCAACCGTTCTTGGACCTCAAtttgttaaaaatacatatgcGAGAATCTCATTCATTTGCACCGTTGAAAAGGTTGGTCAATAATAGAAGAGAGAATGTTCTAAAAGTTGACGTCAGTGATATAACCTGCAAAATATGTTCAGAGAAACCTCCAGATTTGGTTACATTGAAGCGTCACCTCAAGGAGATTCATGAAAAGCCTGTGAATTTAGATCTCCAGGATAATTTAATCCCTTTCAAATTAGAGTTAATTGATGGCTCATACAGATGTGTTATATGTGAACAAATGTTTATTAAAGTAAGGATATTAGTCATACATATGAGCGTACATTTTAATAACTATAGTTGTGAAGTATGCGGTTCTGGATTTATGACTTTGAGGCTTCTAAAGAAACATTTGGAAGTACACGAAACTGGAAATTTTCCATGCGATCGTTGCAATAAAGTTTTTAGCACTTCATACAAAAGAAATTTACATATACGTGGAGtacatttaaaacaattacCTAGGCGATGTCCAATGTGTCCTGAGAGATTTAATTCGAACTACAAAAGGACTATACATTTGCAGGATGTCCATAATCAAGCAACAAGGGTACATAAATGTGAGACTTGCGGTCGTGGTTTTAATTTGAAGTATCATTTGATATGTCATACGAGATCGGTACATTTGCAGGAGAGGAATCAGCAATGTGAAATTTGCCAACAAAGGTTCTGTAATAAGGAATCATTAAAACGTCACATGGTGATTCATACAGGAGAGAAGAATCATAAATGTGACGTATGCGGTATGGCATTCCTGAGGAGGAAAAATTTGAAGGATCATTTGCGTTTGCACAATATAGAATAG
- Protein Sequence
- METCTAYPFKYRKGTYLCFFCRSTFLEPEKLREHNHFQHAEVKHLKPRKYEPLKMDFATTICKLCGINIDDYAMLKIHLTVEHGKIIDSTYGDSVLPYKLSKEEHCCQICGKTYEMFLSLHKHMNDHYEHYICETCGKGFATSQRMVNHARTHERRDFPCKKCTDMFPSYASLYAHNAKIHRSNKRYKCPICDEKFASYKHRLKHLKAIHGEKTAVFPCPSCPRVFDLCSRRTAHIRFQHLQERKHMCSICGMKFFTNYELQEHSIKHGGERIYQCDVCKKSYARLKTLRPTPRQDFLKENNGETAAQLAERTKNFTDDDIKVRKRHAVILLEASNICPFRWTKNLYICFYCDEQFSDPKKLRLHNTQHRSLSNIQIRHTLSKLRKYELVKVDVTDIQCKLCEEYIPDFPSLKWHLLERHKKNLDPKSADGVLPFKITIHEFQCALCVEKYEEFKSLNQHMNVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCDSCDKIFRSTNAKNEHHATVHMKVKRHRCPQCPETFRNYFQRNKHISSIHGLKLKEFKCTMCPKVFTLSGWDWSIADSKRRIVPLFQVAYDRSLCRPLGTLVDFSLLPRPFKKYSIQFEPSRSPSPVYMPRSPSPLVETFRRAPLIATIASKSIKNPNCRQNALTVFEFSTVYPFVYGNNKFKCFVCSQPFLDLNLLKIHMRESHSFAPLKRLVNNRRENVLKVDVSDITCKICSEKPPDLVTLKRHLKEIHEKPVNLDLQDNLIPFKLELIDGSYRCVICEQMFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHETGNFPCDRCNKVFSTSYKRNLHIRGVHLKQLPRRCPMCPERFNSNYKRTIHLQDVHNQATRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCEICQQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHNIE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -