Lmon036397.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991108.1:454970-477206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2e-06 0.00022 22.7 0.9 1 23 222 244 222 244 0.99 2 14 0.00018 0.019 16.5 6.8 1 23 250 272 250 272 0.96 3 14 0.0016 0.17 13.5 2.8 1 23 278 300 278 300 0.98 4 14 5.6e-08 6.1e-06 27.5 2.7 1 23 306 328 306 328 0.99 5 14 6.3e-05 0.0068 18.0 2.3 1 23 334 356 334 356 0.99 6 14 0.0081 0.89 11.3 3.9 1 23 362 384 362 384 0.93 7 14 3e-05 0.0032 19.0 1.2 1 23 608 630 608 630 0.99 8 14 9.9e-06 0.0011 20.5 5.8 1 23 636 658 636 658 0.99 9 14 0.005 0.54 12.0 4.0 1 23 664 686 664 686 0.98 10 14 3.9e-05 0.0043 18.6 1.8 1 23 692 714 692 714 0.99 11 14 0.0002 0.021 16.4 1.3 1 23 720 742 720 742 0.99 12 14 0.00038 0.041 15.5 6.9 1 23 747 769 747 769 0.97 13 14 5.3e-05 0.0057 18.2 0.6 1 23 775 797 775 797 0.98 14 14 1.6e-05 0.0017 19.9 4.7 1 23 803 826 803 826 0.97
Sequence Information
- Coding Sequence
- ATGTATTGTTTAGTTAACACTAAACTACAAGATATCTACGAAAAGTTAACGGCGACGTCTttaaaaCCAAAACAGTTAGTGGATATGTACACACTTAAGGTACACCCATTGCTGCAGTTGTCTTGTGTGCCAGTGAATTTGGAGGTGACACATGATGATGAAGCTGATCACCCTGTGGAGCCAGTTAATATGATACATGTACATGTGAAAGAGGAGAAAATTGAAGATGCACAAGACGATTACATAGATGATGAATTCAGTGAACAATATACAGCAGTAACAAATGTTGTTAAAGTTGAACATGTTACTGAAGAAGACAATGATGTATCAAGCTACGGCACCAATATGAGACGtgctaattataatataactacTAAACGTGATGAAGATAACATTAAAGATACAAAACCTGATATTAATAATGTTGATGTCAATATTCAAAATGACATCAAACCAACTAAATACAGCGACATGTTAATGGAACCTATTGAGATCGTACCGATTACAATGGATTTGGCGTGTGTTGCCAATGCGTCAATTGAAAACCCCAAACTAGTTGAAGTACCTTTTAAAGTTGAAAATACAAGATCAAAAAAGCTGACCATAGGCaaatatgtaagaaaaaaagAGAAAGTAAATGAAGTAAACACAGATGAAAAACGTTTTAAATGTGATGTATGTGGCAAGGGTTTTAGTGGCAGAcgacatttattattacatatacgtATTCATTCTGGCGAGAGACCATATAAATGTGATATGTGTGATAAAAGTTTTGTAAGAGCACATCACTTAAAATATCATAGCCACGTACACACCGGGGAGAAACCATATAAATGTGATGTATGCGAAAAACATTTTGGTCTAAAGAATAGTTTAACATTACATAAGCGTTTGCATACTGATGAAAAACCTTATAAGTGTGACATATGTGACAAAAGTTTCAAGCAAAAGTTCACTTTAAGTGATCATATGCGTACACACACTGGTGAGAAGCCATTCAAATGTGATATGTGTGAGAAATACTTTAGCCGATACCAAGCCTTATCAGTACACAAACGAACACATACCGGTGTAAAGCCTTATAAATGTGATATGTGCGGGCAAGATTTCTTTCAGAAACAATATTTAGTACGACATTGCCTGCGACATACCGGTGAAAAGCCATATAAAtgtgatTTAAAACTAAAACGTGTACTAGATATGAATACATTGAAAATAGTACACCCATTGGTGCAGTTGTCTTGTGTGCCAGTGAGTGTGGAGGTGACACATGATGATGAAGCCGATCACCCTGTGGAGCCAGTTGATATGATACATGTACATGTGAAACAGGAGAACATTGAAGaTGCACGAGACAAATACATAGATGATGAATTCAGTGAACAATATACAACAGTAacaaatattgttaaagttgaACATGTTACTAAAGAAGACAATGATATATTAAACTACGACACCAATATGAAACGTGCAAAATATGATATAACTACTAAACGTGATGAAGATAACATTCATGATACAAAACCTGATATTAGTAAAGTTgatgtaaatatacaaaatgacATCAAACCAAGTAAATGCAGCGACATGTTACTAGAACCTATTGAGGTCGTAACGACGGCGATGGATTTGGGGTCTGTTGAAGCTAGTGCGTCAATTGAACATCCCAAGCTAGTTAAAGTATCTATAcaagttgaaaataaaatatccaaaaAATCTCAAACAGTAGCGAAAGACAAgcattgtataaataaatccaAAAAGCGTATAAGAAAGAGAGAGAAAGTAAATGAACTAAACACAGATGAAAATCCTTTTAAATGTGATGTATGTGGCAAAGGTTTCGTTGGAAGAcgacatttattattacataaacgTATTCATTCTGGTGAAAGACCATATAAATGTGATAAGTGTGATAAAAGTTTTGTAAGAGCACATCACTTGAAATATCATAGCCGCGTACACACCGGGGAGAAACCTTACAAATGTGATGTATGTGAAAAACATTTTGGTCTAAAGCATGGTTTGACATTACATAAACGTTTACATACCGGTGAAAAACCTTATAAGTGTGACATGTGTGAGAAAAGTTTCAAGCAAAAGATTGTCTTAATCGATCATATTCATACACACACTGGTGAAAAGCCATACAAATGTGATACATGTGACAAATATTTTAGCCGCTACCAAGTTTTAGCGATACATAAACGTATACACGGTGAAAAGACTTATAAGTGTGATACGTGTGGGAAATGTTTCTTTCAGAAGCAACATTTAGTACAACATTCCCTTCGACATACCGGTGAAAAGCCATATAAATGTGATGTGTGTAAAAAAGCATTTACTACAAGAGGCATTTTGAATGCGCATTATCGTTTACACACTGGGGAGAAACTTCATAAGTGTGATGTATGTGAGACATACTTTATTCAAAAACATAATTTGACTCGTCATATGCGCGTGCAACACAAGCAGCCAGCCAACTCGACTAAACGTCTAAAATAA
- Protein Sequence
- MYCLVNTKLQDIYEKLTATSLKPKQLVDMYTLKVHPLLQLSCVPVNLEVTHDDEADHPVEPVNMIHVHVKEEKIEDAQDDYIDDEFSEQYTAVTNVVKVEHVTEEDNDVSSYGTNMRRANYNITTKRDEDNIKDTKPDINNVDVNIQNDIKPTKYSDMLMEPIEIVPITMDLACVANASIENPKLVEVPFKVENTRSKKLTIGKYVRKKEKVNEVNTDEKRFKCDVCGKGFSGRRHLLLHIRIHSGERPYKCDMCDKSFVRAHHLKYHSHVHTGEKPYKCDVCEKHFGLKNSLTLHKRLHTDEKPYKCDICDKSFKQKFTLSDHMRTHTGEKPFKCDMCEKYFSRYQALSVHKRTHTGVKPYKCDMCGQDFFQKQYLVRHCLRHTGEKPYKCDLKLKRVLDMNTLKIVHPLVQLSCVPVSVEVTHDDEADHPVEPVDMIHVHVKQENIEDARDKYIDDEFSEQYTTVTNIVKVEHVTKEDNDILNYDTNMKRAKYDITTKRDEDNIHDTKPDISKVDVNIQNDIKPSKCSDMLLEPIEVVTTAMDLGSVEASASIEHPKLVKVSIQVENKISKKSQTVAKDKHCINKSKKRIRKREKVNELNTDENPFKCDVCGKGFVGRRHLLLHKRIHSGERPYKCDKCDKSFVRAHHLKYHSRVHTGEKPYKCDVCEKHFGLKHGLTLHKRLHTGEKPYKCDMCEKSFKQKIVLIDHIHTHTGEKPYKCDTCDKYFSRYQVLAIHKRIHGEKTYKCDTCGKCFFQKQHLVQHSLRHTGEKPYKCDVCKKAFTTRGILNAHYRLHTGEKLHKCDVCETYFIQKHNLTRHMRVQHKQPANSTKRLK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -