Lmon016990.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lymantria monacha
Gene Symbol
-
Assembly
GCA_905163515.1
Location
LR991092.1:11031990-11055519[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2.3e-05 0.0025 19.4 2.2 1 23 422 444 422 444 0.97
2 14 0.0057 0.62 11.8 0.4 1 20 450 469 450 472 0.93
3 14 1.7e-05 0.0019 19.7 5.6 1 23 491 513 491 513 0.98
4 14 0.00012 0.013 17.1 4.9 1 23 519 541 519 541 0.99
5 14 3e-05 0.0033 19.0 5.3 1 23 547 569 547 569 0.97
6 14 9.3e-06 0.001 20.6 7.3 1 23 575 597 575 597 0.97
7 14 5.8e-07 6.4e-05 24.4 2.9 1 23 603 625 603 625 0.97
8 14 8.3e-05 0.0091 17.6 6.7 1 23 631 653 631 653 0.97
9 14 8.2e-05 0.009 17.6 6.5 1 23 659 681 659 681 0.97
10 14 4e-07 4.3e-05 24.9 1.9 1 23 687 709 687 709 0.98
11 14 4.1e-05 0.0044 18.6 7.9 1 23 715 737 715 737 0.98
12 14 3.3e-05 0.0036 18.8 6.8 1 23 743 765 743 765 0.98
13 14 1.6e-06 0.00018 23.0 4.2 1 23 771 793 771 793 0.98
14 14 5.2e-06 0.00057 21.4 3.2 1 21 799 819 799 819 0.96

Sequence Information

Coding Sequence
atgaatcaggatcacCATAACATGAATACGGGTGGCGGCCAGCCTCCGGGAAGTTCTGAGTCGCAGAATCAGAGGGTTCAAGCTGTTCAACAACAGCAACAGAATACCTTGCCAGCCACAACATCTGCTACTGATCTACGAGTAAACTCTGTGAACTCTGCTGTAAACGTAGCTTTGTCTAGTGTAGCTAAATATTGGGTGTTTACTAATTTATTCCCCGGTCCTATACCACAAGTATCTGTCTACGGATTGCCAGCGAATGCTAGGCTTGAAAATGGAAAACCTGTGCAGGATCTTGGTCAAACACATGCTAGTATTTTAAATGGAGATCCAAATATCATACTTGGGCATCATGCTGGACAGTCACAAGTCACTGTCTCTGCTCCTGGTGGCCAGCAGATACCAGTATCTCAGATCATTGCCACACAGTCTGGACAAACTCATGAAGCTCTCGTGGCACACAGTCAACAAGCAGAGTTAGCAGCACAAGATGGCAGCAACAACCAGCAGATCTCTGTTAGCACAGGCCAGCCTACCCATCAGCCCAATAGGCGGGTTGAATTTGTACAACACCATAGTGTGGATATGGGACATCATTCACAACAACACATTATGCAGCAACAGCTCATGGCAGCAACACGGCCGGAACATGCAAACCAGCAGATACAACTAACAGTTAGCGAAGATGGTATTGTGACGGTGGTAGAGCCTGCTGGTAGTAAGATGGTCGATAAGGAAGAACTTCATGATGCAATAAAAATGCCCACCGATCATGGCCTCACTGTTCATCAGTTGCAGCAAATTGTGGGACAACAGGTGATAGACAGCGTAGTTCGCATAGAGCAAGCGACCGGTGAGCCTGCCAACATACTTGTCACACACAACCCTGATGGCACCACATCCATTGAAGCCAGCGCTGCAGAAACACTCATAGTCAAAGATGAGAAGAACTCTTCCAAGATGGAAACCGCACAGTTCGCGATACCCGCGGAAATAAAAGATATCAAGGGCATcgatttaaaaagTGTTGGTGCTATGGGAATGGAGGGAGCAGTTGTCAAGATATCGGCTGGTGCGTCGGAACACGATCTTCATGCGATGTACAAAGTAAATGTTGAAGATCTGTCACAATTACTCGCTTATCATGAAGTGTTTGGAAAATTAAATTCTGAAGGACAACAACAAGCtaagGTAATGAGTGAGGTAGAAGTAGAGGCGGGTACGAGTACGGCAATGTCAGAAGCCGAATCTTCGCCAGGCCATCATTCATGCGATATTTGCGGCAAAGTATTCCAATTTCGCTATCAACTTATTGTGCATAGgcGTTATCATGGTGAAAGTAAGCCATTTGCATGCCAAGTCTGCGGTTCGGCTTTCGCAAATCCCGCCGAGTTATCGAGGCATGGAAAATGCCATCTTGctGGTGATCCTAACGAGAGACATGCTAAAAGGTTGGCGCAAGATAAACCGTACGCATGCACTACTTGTCACAAAACATTCTCCAGAAAGGAACATTTGGACAATCATGTACGGAGCCACACTGGAGAGACTCCATACAAATGCCAATTTTGCGCAAAAACTTTCACCCGTAAGGAGCATATGGTGAACCACGTCCGTAAACATACGGGCGAGACACCGCACCGATGCGATATTTGCAAGAAGAGTTTCACAAGAAAAGAACACTTCATGAATCATGTTATGTGGCACACGGGTGAAACTCCACACCATTGTCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCACTTAGTGAACCATATGAGATCTCACACAAACGATACTCCATTTAGATGTGAACTGTGCGGCAAATCTTTCACGAGAAAAGAACACTTCACCAATCACATATTGTGGCATACGGgTGAAACACCGCATCGTTGCGACTTCTGTTCTAAAACGTTTACGCGTAAAGAGCACTTACTGAATCACGTACGCCAACACACTGGTGAATCACCACATCGATGCAACTTCTGTAGCAAATCGTTTACACGCCGCGAACATCTTGTCAACCACGTGCGACAACACACTGGCGAAACACCTTTCCAATGTGGATATTGTCCTAAAGCTTTCACTAGGAAAGATCACttagtaaaCCACGTCCGCCAGCATACAGGCGAATCGCCGCATAAATGTTCGTTCTGTACGAAATCGTTTACGCGTAAAGAGCACCTCACAAACCACGTTCGGCAGCATACCGGCGAGTCGCCCCATCGTTGTACCTTCTGCGCCAAATCCTTCACCAGAAAAGAGCATCTCACGAATCATATCAGACAGCACACGGGAGAAACACCACACAAGTGTACGTACTGCCCGCGAGCATTCGCGAGGAAGGAGCATCTCAACAACCACATACGTCAGCACACCGGCGTCACACCACACTCATGCTCATACTGTAACAAGAGTTTCACGAGGAAGGAGCATCTCGTCAATCATATACGGtaa
Protein Sequence
MNQDHHNMNTGGGQPPGSSESQNQRVQAVQQQQQNTLPATTSATDLRVNSVNSAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPANARLENGKPVQDLGQTHASILNGDPNIILGHHAGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQAELAAQDGSNNQQISVSTGQPTHQPNRRVEFVQHHSVDMGHHSQQHIMQQQLMAATRPEHANQQIQLTVSEDGIVTVVEPAGSKMVDKEELHDAIKMPTDHGLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAAETLIVKDEKNSSKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQAKVMSEVEVEAGTSTAMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPFACQVCGSAFANPAELSRHGKCHLAGDPNERHAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYKCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHSCSYCNKSFTRKEHLVNHIR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-