Lmon032595.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991104.1:4051164-4059289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.044 4.8 9.0 1.6 2 23 30 52 29 52 0.96 2 31 0.0043 0.46 12.2 1.9 1 23 57 80 57 80 0.96 3 31 0.035 3.9 9.3 1.8 1 23 84 107 84 107 0.91 4 31 1.1 1.2e+02 4.6 0.5 2 23 110 132 109 132 0.94 5 31 2.5 2.7e+02 3.5 0.1 2 20 138 156 137 158 0.92 6 31 0.13 14 7.5 1.6 1 23 206 229 206 229 0.90 7 31 0.014 1.5 10.6 2.9 1 23 274 296 274 296 0.96 8 31 4.3 4.6e+02 2.8 0.4 2 20 324 342 323 346 0.74 9 31 0.27 29 6.6 3.0 2 23 367 389 366 389 0.94 10 31 0.00012 0.013 17.1 0.4 1 23 394 417 394 417 0.96 11 31 0.029 3.1 9.6 0.8 1 23 422 445 422 445 0.95 12 31 0.0023 0.25 13.1 1.1 2 23 448 470 448 470 0.96 13 31 0.0063 0.69 11.7 1.0 2 21 478 497 477 498 0.94 14 31 0.005 0.54 12.0 2.4 1 23 550 573 550 573 0.97 15 31 3.4 3.6e+02 3.1 0.0 2 23 646 669 645 669 0.88 16 31 2.2e-05 0.0024 19.4 0.2 3 23 676 697 675 697 0.94 17 31 0.0072 0.78 11.5 2.9 2 23 702 724 701 724 0.94 18 31 0.00072 0.079 14.6 4.0 1 23 729 752 729 752 0.94 19 31 9.6e-05 0.01 17.4 5.4 1 23 756 779 756 779 0.97 20 31 0.00012 0.013 17.1 0.2 2 23 786 807 785 807 0.96 21 31 3.4 3.7e+02 3.1 2.5 1 12 813 824 813 827 0.89 22 31 0.0031 0.34 12.6 0.8 1 23 864 887 864 887 0.95 23 31 0.0063 0.68 11.7 0.1 2 23 918 940 917 940 0.95 24 31 0.014 1.6 10.5 2.3 2 23 963 984 963 985 0.95 25 31 0.0011 0.12 14.0 1.7 1 23 990 1013 990 1013 0.97 26 31 0.0009 0.098 14.3 0.6 1 23 1018 1041 1018 1041 0.94 27 31 0.0022 0.24 13.1 0.7 2 23 1047 1069 1046 1069 0.92 28 31 0.00033 0.036 15.7 0.1 2 23 1077 1099 1076 1099 0.97 29 31 0.23 25 6.7 0.0 2 23 1106 1127 1105 1127 0.95 30 31 2.1e-06 0.00023 22.6 0.7 1 23 1133 1155 1133 1155 0.95 31 31 2.3e-05 0.0024 19.4 0.6 1 23 1161 1184 1161 1184 0.96
Sequence Information
- Coding Sequence
- ATGATTAGTCATTTGATTTCTAAACATGAATTGCCTTACACTAAAAGTGTCAAGTTGATGATAACGACTTACAAGCTGCTAGATTTGCAGTGTCTACTCTGCGATAAACTCTTTGATTATTTTCCAAAATTAGTCTCGCATATGAATACTTGCCATCCTAGCGACTGTTTCTCTTGTGATAAATGTGAACAAACGTTCAATAAAAAACGAGATTTGGATAGTCACGGTAGAAACTATCATAGGAATGAATATTCATGTATGAAATGCAACGAAATATTTGCATCTAATTCGCAGTTACGGTTCCATAGATTGCACGCGCACCCATCCACTTGTAATATATGCCTACAACCGTTTTCTTCAGATATAAAGCGTTTAAGTCATATGAAAAATGAACATACTTCTGATCAAGTCAAATGTGGGTTTTGTGAACAAGTTTTGTCGACGAAACAAGCTGTGTTACGTCACGCTTCAAAATGTACAGCGAAAAGAGATGCGCCTGAAACTATCGTTGtggatgatgaaataaaaaaagtgcCAACAAAAGATATCCGCAATTGTATTGctactattataaatatgtcCACCGCGTTACCGTTTAAATTCTTCATGAGTAAATTCAGGTGTTTTTACTGTTCTAAAGATTTTGCTACTTGTGATATTTTGAAAGAACATACAATTGCAGCACATCCTCATTGCGATGTTGGCGATAAATATAAATTGCCAGGACCGTACGCAGGATGTACGTCTGAAAGGAGACGAAAAAATCTGAAAACACTTTTTGACAACACCTCAATACTGCCATTCAAATGGCGTGGCAAATATCTTTGCTTCTATTGTGGCAAGAATTATACGGAATATCTAGAGTTTAAAAAGCATACAAAATCTCACGGTCTATGCAATACTAAAGATTATTCGTTGAAATTAATCAAAGGAAATAATATTGAGATTAAAATTGACGTCTCTGAAATAGTTTGTGATATATGCAATGAAAATTTCAGTTGTTTTGACGAAATAATAGATCATTTGATCGGAAAACACGATTTAGATTATAACAAAACCATTGATATTCCTTTTCAAGAATACCGCTTGGTGGATTGTAGGTGTTTACACTGCGAAGAGAAGTTTGCTTATTTTGGATATTTAGTAACACACGTAAACAACATGCATCCTCAAAATTGCTTCATTTGCAATGACTGTGGTGGTCGTTTTAACAAAAAAAGAGATTTAGCTATACATATAAGAAATTATCATCGTGAAGGAGGTTATCCCTGCGATTCGTGCCTTCAAATTTTTGAAACTCTTCAATCTTTGAGAagacataaaaataataccCATTTTAGGCAATGTAAAAGCTGTAATTCGAGATTTGCGTCGTTATCTTTACTACAAAAACATTTACAGGTCTCACATCCTCACGAAGAAGGTAATATGAAGTGCACTTATTGCTCAAAAGAATTCCATTCATCGATAGGTTTACGGCAGCATATAAGTAAATGTAAAGTGAAAATTAATTCACAAGTTGAACTGGACACTTTCCCAGAAGACAGCTTAGAACCCCGAAGGAAGCAAAATATACAACAAATTCGTCAAAATATACAATGTGTTTTAAATATGTCTACAGCTATtccttttaaatttttctctaaATATTCTTGCTTTTATTGTTCGAAAAAGTTCTTTGAATTTGATGATCTCCGGCAGCATACAAATATTGAACATCCAATATGCGACCTCAAACAAAAATGCATGCAAAAATGCAAAGGTGAAAGAATCACTGTCAAAATAGATATATCCAATTTAGCGTGTAAACTATGTTCATTCCCAATGCTCAATTTAGAAACTTTAATCGATCATTTAATACTCGAGCATAAAGCAAATTATGATAAATCTATCACGGGCAGTCTTGAGCCGTTCAGAATTATTAAAGACAATATGCCATGTCCTATATGCCCAGATAAAGTATTCCGTTATTTCGGTATTTTGTTACGTCACGTTAATGCTGaacatagtaataataataggatTTGTGATTTCTGTGGCCGAAGTTTCCGTAATGCGGCAAATTTGAACGTTCACATCACTTATTCACATACAGGATCTTGTGAATGTGATGTTTGTGGagtcaaatataaaaatcaatggtGCTTAGCTAGACATAGAGCTAAAACTCACAACGCGAaagaccataaatgtcccaaatGCCCAGAAACTTTCAATTCCCAATACCATAAACAAAAGCATTTGATTGAAATGCATAATATCGGTCACAAATGTGATTATTGCAATAAAATGTTCACTAGAAACAGTTTTATGAAGGATCATGTTCGAAGAACTCATTTGAAGGAAAAGAATGTTCCTTgtcctatttgtaatgaaaAGTTTTTCGATAACTACCTATTGAGGATGCATATGGTTAAACACGAGGGTTTCCGGAAGTTCTGTTGCACAGTTTGTGGTACAAAATTCAATACAGTGGAGGACAAATATAAGAAAATGGAAATAGCAAGAAAGCTTTTGATAAAACGACGTAATGTCGAATATGTATTACAATATAGTAATGTGACACCATTTATGTGGCACAAGGGCAAGTATAAATGCTTTTACTGCAACGAAACCACCAAAGACCCTGTTTTACTAAGGGAGCATAGTTCAAAAGTTCACCAATTCGCTAATTTGGAACTTGTTGTATTCGATAGAACGAAAAATAATAGGAATAAAGATGCCGCTGTTAAGATTGATGTTACTGACGTATCTTGCAAGTTATGCCCACAGTCCGTTACTAATTTAGAAGAATTGATACATCATTTGATAATAGCACATGACGCAGAATATGATGTTAGTGTCCCGAATTGTTTGCTACCGTTTAAATTGGACAAAGAACAACCGACCTGTCCCACTTGTAATATGAAATTCGTTTTCTTTGAATATTTGCTCCGACATGCGAATAAGCATCACCTTTCTCATCATTATATTTGTGATGTCTGCGGTACCAGTTTCCAAGGTGAAAATCATCTTAAAATGCATTATAGATATTATCATAGAGAAGGTGGTTATACCTGTGAGTATTGTGGCATAAGTTTTACAACTTTATCTAAGAAAATTCTTCACGAAAAAAATGTCCACTTGGTaaatctttccacatgtccgcatTGCCCAGAGACATTTAAAAGTCCATATTTAAAGAAATTGCATTTAGCAAATGTTCACGGCGTTGAGGAACTAAAAATTAAGTGCCCTTATTGTCCAAAAGTGTATCCTCAAGAATCTATTATGTCGAGGCACATGAGGAGGGTCCACTTGAAAGAGAAAAATGTAGAATGTGAAGTCTGTGGTGATAAGTTCTTTGGACCCTATGACGTGAAACTACATATGGTTAAACATAATGGTGATAAGAAATTTGTCTGTTCAGTTTGTGGCAAGAAATTTTCAAAGCGTAGCAATTTGAATACTCATGCTATATTACACAACAAGGAAAAAGACTACATATGTGAATTCTGTAACAAAGCATTTGCATATCAAGCTAACTTAAAAATGCATGTCAGAAATAGACATGGTCCATTCGATGACACAAGAATTATTGATGACATAGATGAAAGTGAAATGGTGCAAATGGAGATTATTAAAGATGATTTGGAAGGAGAAATTGCTGGACAGTATATTCAATGA
- Protein Sequence
- MISHLISKHELPYTKSVKLMITTYKLLDLQCLLCDKLFDYFPKLVSHMNTCHPSDCFSCDKCEQTFNKKRDLDSHGRNYHRNEYSCMKCNEIFASNSQLRFHRLHAHPSTCNICLQPFSSDIKRLSHMKNEHTSDQVKCGFCEQVLSTKQAVLRHASKCTAKRDAPETIVVDDEIKKVPTKDIRNCIATIINMSTALPFKFFMSKFRCFYCSKDFATCDILKEHTIAAHPHCDVGDKYKLPGPYAGCTSERRRKNLKTLFDNTSILPFKWRGKYLCFYCGKNYTEYLEFKKHTKSHGLCNTKDYSLKLIKGNNIEIKIDVSEIVCDICNENFSCFDEIIDHLIGKHDLDYNKTIDIPFQEYRLVDCRCLHCEEKFAYFGYLVTHVNNMHPQNCFICNDCGGRFNKKRDLAIHIRNYHREGGYPCDSCLQIFETLQSLRRHKNNTHFRQCKSCNSRFASLSLLQKHLQVSHPHEEGNMKCTYCSKEFHSSIGLRQHISKCKVKINSQVELDTFPEDSLEPRRKQNIQQIRQNIQCVLNMSTAIPFKFFSKYSCFYCSKKFFEFDDLRQHTNIEHPICDLKQKCMQKCKGERITVKIDISNLACKLCSFPMLNLETLIDHLILEHKANYDKSITGSLEPFRIIKDNMPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGVKYKNQWCLARHRAKTHNAKDHKCPKCPETFNSQYHKQKHLIEMHNIGHKCDYCNKMFTRNSFMKDHVRRTHLKEKNVPCPICNEKFFDNYLLRMHMVKHEGFRKFCCTVCGTKFNTVEDKYKKMEIARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPVLLREHSSKVHQFANLELVVFDRTKNNRNKDAAVKIDVTDVSCKLCPQSVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKEQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISFTTLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLKEKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCSVCGKKFSKRSNLNTHAILHNKEKDYICEFCNKAFAYQANLKMHVRNRHGPFDDTRIIDDIDESEMVQMEIIKDDLEGEIAGQYIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -