Lmon026455.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lymantria monacha
Gene Symbol
-
Assembly
GCA_905163515.1
Location
LR991099.1:15978701-15999544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0001 0.011 17.3 0.1 3 23 96 116 95 116 0.97
2 18 9.3e-07 0.0001 23.7 1.2 1 23 122 144 122 144 0.99
3 18 5.8e-06 0.00063 21.2 2.7 1 23 150 172 150 172 0.99
4 18 1e-06 0.00011 23.6 1.8 1 23 187 209 187 209 0.99
5 18 5.3e-05 0.0058 18.2 3.1 1 23 224 246 224 246 0.98
6 18 3.7e-07 4e-05 25.0 1.5 1 23 261 283 261 283 0.99
7 18 0.00016 0.018 16.7 2.8 1 23 289 311 289 311 0.98
8 18 6.7e-05 0.0073 17.9 0.2 1 23 318 340 318 340 0.97
9 18 1.1e-06 0.00012 23.5 2.3 1 23 346 368 346 368 0.99
10 18 0.037 4.1 9.2 1.8 1 23 375 397 375 397 0.98
11 18 6.3e-07 6.8e-05 24.3 2.3 1 23 403 425 403 425 0.99
12 18 0.043 4.7 9.0 1.8 1 23 432 454 432 454 0.98
13 18 2.6e-06 0.00028 22.3 1.5 1 23 460 482 460 482 0.99
14 18 0.00048 0.053 15.2 0.7 1 23 489 511 489 511 0.99
15 18 5.6e-06 0.00061 21.3 2.3 1 23 517 539 517 539 0.98
16 18 0.0021 0.22 13.2 0.3 1 20 545 564 545 567 0.93
17 18 4e-05 0.0043 18.6 1.4 2 23 574 595 573 595 0.96
18 18 3.1e-06 0.00034 22.1 1.3 1 23 601 624 601 624 0.97

Sequence Information

Coding Sequence
ATGAACCAGCACCATCAAACACATCAAGAGGATTCAAAAGACAGCCTCATAGTACAACAACATGTGCAACATCAACAGGATCTCATGGAACAACATCAACAACAACAAGAAATGCAACAACAGGACGATGATttaaGCTTCAAAGGAATGGATGATGAGGGTGTTGATTTGGAAATGGATGCTCGACAATGTTCTCAGggTATGGGAGTAGATATGGGATCAGTTCAAACTAAAATGGAAATGGCGAATGGGGGCCAGTCGACACCTCGTTCTAAACCTCAAGCCTGTAAGGTCTGTGGCAAAGTACTATCATCCGCTTCATCATATTACGTCCACATGAAACTTCATTCAGGAAATAAACCCTTCCAGTGTACTGTTTGTGACGCTGCATTTTGCAGGAAGCCTTATCTAGAAGTCCATATGCGTACCCACACAGGAGAACGCCCTTTTCAATGTGATTTATGTCTCAAAAGATTTACACAGAAATCCAGTTTGAACACGCACAAACGTGTCCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGACATCTGTGAGATGCGGTTTACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGgggAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGCGCGTGGATTCGCGTGCGGGCACTGCCCGGCAGCGTTCGTCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGTGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGACCATATCAGTGCGACATCTGCCTCAAACGCTTCACCCAGAAATCCAGTCTCAACATTCACAAACGGACGCATTCAGTGCAGGGCCGGCCGTTCCAGTGTCTGCAGTGCCCAGCCGCCTTCACGTGTAAGCAGTACCTCGAGATACACAACCGGACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAGTCTACACTCAATATACACAAAAGAACGCACACAGTGCAAGGGCGGCCGTATCAATGCATGGAGTGTCCGGCGGCGTTCACATGCAAGCCGTACCTGGAGATTCACATGCGCACCCACACCGGTGAAAAGCCATTCGAGTGTGATCTCTGTTACAAACGCTTCACGCAGAAATCCACGCTGACCATTCACAAGCGAATTCATACCGgCGAACGCCCATATGCATGTGATATTTGTCAGAAAAGATTCGCGGTGAAAAGTTACGTAACAGCACACAGATGGTCTCACGTGGCGGATAAGCCGTTGAACTGCGACCGGTGTTCAATGACATTCACGTCTAAGTCACAGTTCGCGCTGCACATTCGCACGCACGCGTCCGGCTCATGCTACGAATGTAGTGTCTGCGGACGATCCTTCGTCAGAGACAGCTATCTTATAAGACACCACAATCGTGTCCACCGCGAGAACCACAGCAACGTGTCAGCCAATAGCCTGGGCACGTCCATAGCAACTAACACAAATAATACGAATAACGGCAGCTTTGACACTCCTGGCGTTTGTGACTTAAGTTTTGTACCAATGGTGAATCGTTACTTGACGTCCCAAGGAACACAAGTATCCATGCAAGATACAAACAAAATGTCAGCCATGTCCCCGCAATCAATCAcctccatttCGTCTCCGCCCCCCTCGCATACGCCTACGCCCCAACCACAGATGTCTGGTCAGTTGCATCTCGCCGACTGA
Protein Sequence
MNQHHQTHQEDSKDSLIVQQHVQHQQDLMEQHQQQQEMQQQDDDLSFKGMDDEGVDLEMDARQCSQGMGVDMGSVQTKMEMANGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCDICEMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQARGFACGHCPAAFVRRPYLDIHMRTHTGERPYQCDVCLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGEKPFECDLCYKRFTQKSTLTIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHASGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSLGTSIATNTNNTNNGSFDTPGVCDLSFVPMVNRYLTSQGTQVSMQDTNKMSAMSPQSITSISSPPPSHTPTPQPQMSGQLHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01076785;
80% Identity
-