Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.3e-05 0.013 16.7 0.1 18 41 194 214 186 216 0.88

2 5 0.27 1.5e+02 3.7 0.2 18 41 222 242 218 244 0.85

3 5 0.035 19 6.5 0.8 16 38 248 271 238 271 0.77

4 5 0.0023 1.3 10.3 0.6 18 40 278 297 274 301 0.89

5 5 1 5.8e+02 1.8 1.3 18 40 306 325 298 327 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.3e-05	0.013	16.7	0.1	18	41	194	214	186	216	0.88
2	5	0.27	1.5e+02	3.7	0.2	18	41	222	242	218	244	0.85
3	5	0.035	19	6.5	0.8	16	38	248	271	238	271	0.77
4	5	0.0023	1.3	10.3	0.6	18	40	278	297	274	301	0.89
5	5	1	5.8e+02	1.8	1.3	18	40	306	325	298	327	0.82

Coding Sequence: atgaacagcgGCTCTGGGTATCCTTACTACGAGCATTACGGCGGTACACCACTCTTCCCCACGATGAGCGTCAATGTATCTATGAACATGACGATGCATGGGTGTCCACCAGAACAGCTATGTTCACAGGTACAATGGAACCAAGGTTCAGCCACACCGTCAGTAAATGTCGTCTACCCACAAACACAAAACGTCATATCATCATCCCCATATCCATCCGCAACGTACTCCTTTACAGCTGACTTCAGAACACCCAATCAAAGCGATCCTCTAATCACAGCAACGTCGACTTTCAAGCCATTACTTCAGAATACACAAAAACCGAATCCAAATTATTCAATATTCCAACAAAAGCCAAACTATCAACAGAAACCTTTAGGACAAACGTTAAAGAGGCCACCATCAAAGTTATATATGGAGACGCAGAAGGAACAGAGTATGAGTAATGGTTACGTCCTCAACCATCAGGGACAGATGCATCCACAGGAGTATGGGTACAATACGTGCATTAATGCATCAGGAAAAGTCCAAGTAGGAGCTTTAAGTGGTTGTTCAGAAGACGATGAACAAAAGCCGAATCTTTGTCGAATCTGCGGGAAGACTTATGCCAGACCGAGTACATTGAAGACTCACCTTCGGACGCATTCAGGTGAACGTCCATATAGATGTGGggattgtaataaaagtttcTCACAGGCAGCCAATTTGACAGCACATGTAAGAACCCACACCGGCCAAAAACCTTTCAGgTGTCCAATATGCGATCGGCGATTCAGTCAAAGTTCTAGCGTGACGACACATATGAGGACACATTCAGGTGAAAGACCTTACCAATGCAGATCGTGCAAGAAAGCGTTCTCAGATAGTTCGACGCTGACGAAACATTTGCGAATACATTCCGGTGAAAAACCTTATCAATGTAAATTGTGTTTATTGAGGTTCTCACAATCAGGGAATTTAAACCGACATATGAGGGTACACGGCAACATGTCGGGCGGCATGCTCGGCTGA
Protein Sequence: MNSGSGYPYYEHYGGTPLFPTMSVNVSMNMTMHGCPPEQLCSQVQWNQGSATPSVNVVYPQTQNVISSSPYPSATYSFTADFRTPNQSDPLITATSTFKPLLQNTQKPNPNYSIFQQKPNYQQKPLGQTLKRPPSKLYMETQKEQSMSNGYVLNHQGQMHPQEYGYNTCINASGKVQVGALSGCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMSGGMLG*

Sequence clustering based on sequence similarity using MMseqs2